miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 5' -51.7 NC_004683.1 + 447 0.75 0.464945
Target:  5'- gGCGGUCGaggcggaUCCGGUggACGAGUUGaaGGCc -3'
miRNA:   3'- -UGCUAGC-------AGGUCA--UGCUCAAUggCCG- -5'
18757 5' -51.7 NC_004683.1 + 1524 0.69 0.778595
Target:  5'- gGCGAUCGgcguggCCGGguaucGCGAGga--CGGCa -3'
miRNA:   3'- -UGCUAGCa-----GGUCa----UGCUCaaugGCCG- -5'
18757 5' -51.7 NC_004683.1 + 2743 1.11 0.002064
Target:  5'- aACGAUCGUCCAGUACGAGUUACCGGCc -3'
miRNA:   3'- -UGCUAGCAGGUCAUGCUCAAUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 4218 0.67 0.853458
Target:  5'- -aGAUCGggCCGGUgACGug--GCCGGCc -3'
miRNA:   3'- ugCUAGCa-GGUCA-UGCucaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 4714 0.72 0.616311
Target:  5'- cCGAUgGcacgcaggCCGGUGCGAGggugcACCGGCa -3'
miRNA:   3'- uGCUAgCa-------GGUCAUGCUCaa---UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 5067 0.71 0.671852
Target:  5'- cGCGGUCGUagucgccaCGGccgcccUGCGAGgaACCGGCc -3'
miRNA:   3'- -UGCUAGCAg-------GUC------AUGCUCaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 7032 0.67 0.877888
Target:  5'- gACGAU-GUCgAGUACGAGUgguucgagACC-GCg -3'
miRNA:   3'- -UGCUAgCAGgUCAUGCUCAa-------UGGcCG- -5'
18757 5' -51.7 NC_004683.1 + 8580 0.69 0.757071
Target:  5'- gACGGUCGUguagccaCCAGccGCGGGagucgUGCCGGUc -3'
miRNA:   3'- -UGCUAGCA-------GGUCa-UGCUCa----AUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 8622 0.67 0.877888
Target:  5'- gGCGAUCaggCCGGUGCG-GUgGCCGcccuGCa -3'
miRNA:   3'- -UGCUAGca-GGUCAUGCuCAaUGGC----CG- -5'
18757 5' -51.7 NC_004683.1 + 11034 0.67 0.884771
Target:  5'- uGCGGUCccugcaguucgguGUCCAGU-CGGGgcucAUCGGCc -3'
miRNA:   3'- -UGCUAG-------------CAGGUCAuGCUCaa--UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 12935 0.68 0.807173
Target:  5'- gGCGAU--UCCGGUcuGCGAGUagcggccUGCCGGg -3'
miRNA:   3'- -UGCUAgcAGGUCA--UGCUCA-------AUGGCCg -5'
18757 5' -51.7 NC_004683.1 + 13598 0.67 0.861848
Target:  5'- cGCGAUCGgCUA-UGCGGGccagcucGCCGGCa -3'
miRNA:   3'- -UGCUAGCaGGUcAUGCUCaa-----UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 18263 0.68 0.808132
Target:  5'- gGCGAU-GUCCGGcgACGA---GCCGGUg -3'
miRNA:   3'- -UGCUAgCAGGUCa-UGCUcaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 21698 0.68 0.808132
Target:  5'- -gGGUgGU-CGGUGCGGGUggcGCUGGCa -3'
miRNA:   3'- ugCUAgCAgGUCAUGCUCAa--UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 21833 0.66 0.912724
Target:  5'- cGCGGUCGUugaaccaCCGGUcugcccgcggGCuGGGUUGaauCCGGCg -3'
miRNA:   3'- -UGCUAGCA-------GGUCA----------UG-CUCAAU---GGCCG- -5'
18757 5' -51.7 NC_004683.1 + 22164 0.72 0.604096
Target:  5'- cCGAUaCGugguacccgaauaUCCAGUACGGGUUGCgCGGg -3'
miRNA:   3'- uGCUA-GC-------------AGGUCAUGCUCAAUG-GCCg -5'
18757 5' -51.7 NC_004683.1 + 24413 0.67 0.861848
Target:  5'- gGCGAUCGUCgGcuacgGCGGGaccaagccGCCGGCc -3'
miRNA:   3'- -UGCUAGCAGgUca---UGCUCaa------UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 24948 0.66 0.919635
Target:  5'- cCGGUCuuGUCCuuggACGGGUUGCCGa- -3'
miRNA:   3'- uGCUAG--CAGGuca-UGCUCAAUGGCcg -5'
18757 5' -51.7 NC_004683.1 + 25100 0.66 0.899993
Target:  5'- gGCGGUCuggCCAacccgGCGGcGUUGCCGGUc -3'
miRNA:   3'- -UGCUAGca-GGUca---UGCU-CAAUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 32627 0.7 0.747665
Target:  5'- cGCGAUCGagaaCCGGUgggcACGGGUgcucaaggcgGCCGGUc -3'
miRNA:   3'- -UGCUAGCa---GGUCA----UGCUCAa---------UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.