miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 3' -57.2 NC_004683.1 + 13366 0.66 0.657032
Target:  5'- -gUUCGUguucGCCGGGCUGuaGAuauCCGCUg -3'
miRNA:   3'- cuGAGCAa---CGGCCUGACcgCU---GGUGG- -5'
18758 3' -57.2 NC_004683.1 + 20115 0.66 0.646265
Target:  5'- cGC-CGUaucaCCGGuCUGGCcgcGACCACCa -3'
miRNA:   3'- cUGaGCAac--GGCCuGACCG---CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 7402 0.66 0.646265
Target:  5'- gGAUUCGgcgGCCGGGC-GcGCuGCCACa -3'
miRNA:   3'- -CUGAGCaa-CGGCCUGaC-CGcUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 31386 0.66 0.635486
Target:  5'- cGAUguggCGguagGCCaGcACUgcGGCGACCGCCa -3'
miRNA:   3'- -CUGa---GCaa--CGGcC-UGA--CCGCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 26792 0.66 0.635486
Target:  5'- cACUCuUUGUCGcGcagggcuauccGCUGGCGgGCCACCu -3'
miRNA:   3'- cUGAGcAACGGC-C-----------UGACCGC-UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 48608 0.66 0.622547
Target:  5'- uGACgg--UGCCGGcgaggacACUGGCGcggcauugaucgcACCGCCa -3'
miRNA:   3'- -CUGagcaACGGCC-------UGACCGC-------------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 3493 0.66 0.613927
Target:  5'- gGGCUaCGa-GCCGGAaucggUGGUGGCCGCg -3'
miRNA:   3'- -CUGA-GCaaCGGCCUg----ACCGCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 25878 0.66 0.601017
Target:  5'- cGGCUCGgcgucgaguucGCCGGGCagacGCuGGCCGCCu -3'
miRNA:   3'- -CUGAGCaa---------CGGCCUGac--CG-CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 42588 0.67 0.591357
Target:  5'- cGGCggUCGggGCCGGucguccgGCUgggguggucGGCGACCGCg -3'
miRNA:   3'- -CUG--AGCaaCGGCC-------UGA---------CCGCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 45152 0.67 0.581724
Target:  5'- -uCUCa--GCaCGGGCUGGCcGACCGCa -3'
miRNA:   3'- cuGAGcaaCG-GCCUGACCG-CUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 51289 0.67 0.581724
Target:  5'- cACUCaucGCCGaGCUGGagGGCCGCCg -3'
miRNA:   3'- cUGAGcaaCGGCcUGACCg-CUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 25281 0.67 0.581724
Target:  5'- uGGCcgCGcUGCCGGGCcugcaGGCGcacagcgaguACCACCu -3'
miRNA:   3'- -CUGa-GCaACGGCCUGa----CCGC----------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 10803 0.67 0.57532
Target:  5'- cGGCUCGgaucagcgggaggGCCaaucGGAUUGGCGcuggccggugugGCCACCc -3'
miRNA:   3'- -CUGAGCaa-----------CGG----CCUGACCGC------------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 52676 0.67 0.57106
Target:  5'- uACUCGggugGCuCGGGCcGGuUGACCACg -3'
miRNA:   3'- cUGAGCaa--CG-GCCUGaCC-GCUGGUGg -5'
18758 3' -57.2 NC_004683.1 + 9271 0.67 0.549881
Target:  5'- -cCUCGcggggcgcaUGcCCGGGCUGGaCGugCGCCc -3'
miRNA:   3'- cuGAGCa--------AC-GGCCUGACC-GCugGUGG- -5'
18758 3' -57.2 NC_004683.1 + 24354 0.68 0.539382
Target:  5'- cGACUCGUcGCCGcaGGCcacgcggucGCGAUCACCg -3'
miRNA:   3'- -CUGAGCAaCGGC--CUGac-------CGCUGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 30871 0.68 0.528951
Target:  5'- uGACggCGUU-CCGGGC-GGCGugCGCa -3'
miRNA:   3'- -CUGa-GCAAcGGCCUGaCCGCugGUGg -5'
18758 3' -57.2 NC_004683.1 + 51637 0.68 0.528951
Target:  5'- -cCUCGUucUGCgUGcGCUGGCGGCgCGCCu -3'
miRNA:   3'- cuGAGCA--ACG-GCcUGACCGCUG-GUGG- -5'
18758 3' -57.2 NC_004683.1 + 42729 0.68 0.527912
Target:  5'- gGGCUCGcUGUCGGuauCcGGCGcgaagcugcuguuGCCGCCg -3'
miRNA:   3'- -CUGAGCaACGGCCu--GaCCGC-------------UGGUGG- -5'
18758 3' -57.2 NC_004683.1 + 47079 0.68 0.508322
Target:  5'- cGGCUCGguaCCGGugUGGacaucugccccUGAUCGCCa -3'
miRNA:   3'- -CUGAGCaacGGCCugACC-----------GCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.