miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18759 3' -53.5 NC_004683.1 + 38892 0.66 0.869379
Target:  5'- cCCGAuGAGCUGGGgaugccGCGGaAUGCuCGUCu -3'
miRNA:   3'- -GGCU-CUUGGCCU------UGCUgUACG-GCAGc -5'
18759 3' -53.5 NC_004683.1 + 56861 0.66 0.869379
Target:  5'- cUCGGGAcCuCGGuAGCGGCugcgGUCGUCGu -3'
miRNA:   3'- -GGCUCUuG-GCC-UUGCUGua--CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 51875 0.66 0.869379
Target:  5'- uUGAGGuuGCgGGcuGugGACAUGCCGagGg -3'
miRNA:   3'- gGCUCU--UGgCC--UugCUGUACGGCagC- -5'
18759 3' -53.5 NC_004683.1 + 44758 0.66 0.856492
Target:  5'- gCCGAGAuccaaaccuacgacCCGGcGGCGGCggGCCG-CGu -3'
miRNA:   3'- -GGCUCUu-------------GGCC-UUGCUGuaCGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 11373 0.66 0.853178
Target:  5'- gCCGAGAuCgCGGAACuugGUGCCGUa- -3'
miRNA:   3'- -GGCUCUuG-GCCUUGcugUACGGCAgc -5'
18759 3' -53.5 NC_004683.1 + 51167 0.66 0.844733
Target:  5'- gCG-GAACUGGAucCGGCGcGCCGcCGa -3'
miRNA:   3'- gGCuCUUGGCCUu-GCUGUaCGGCaGC- -5'
18759 3' -53.5 NC_004683.1 + 15947 0.66 0.844733
Target:  5'- aCGAGuuCUGGGACGACAUcgagaauucggcGCCGa-- -3'
miRNA:   3'- gGCUCuuGGCCUUGCUGUA------------CGGCagc -5'
18759 3' -53.5 NC_004683.1 + 13786 0.66 0.844733
Target:  5'- aCCGGcGaAACCGGAuGCGACcuUGCCGa-- -3'
miRNA:   3'- -GGCU-C-UUGGCCU-UGCUGu-ACGGCagc -5'
18759 3' -53.5 NC_004683.1 + 35618 0.66 0.836071
Target:  5'- aCGaAGAGgCGGcAACGGCAuaUGCCaUCGg -3'
miRNA:   3'- gGC-UCUUgGCC-UUGCUGU--ACGGcAGC- -5'
18759 3' -53.5 NC_004683.1 + 3376 0.67 0.830773
Target:  5'- cCCG-GAuguUCGGuugugguacgacgccGACGACGUGCCGUUc -3'
miRNA:   3'- -GGCuCUu--GGCC---------------UUGCUGUACGGCAGc -5'
18759 3' -53.5 NC_004683.1 + 49443 0.67 0.827199
Target:  5'- uCCGGGGcagguGCaGGGGC-ACcgGCCGUCGu -3'
miRNA:   3'- -GGCUCU-----UGgCCUUGcUGuaCGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 37006 0.67 0.826301
Target:  5'- uCCGGGAuaccGCCGGGGCGAUGgcgGauucucgaccacaCCGUCu -3'
miRNA:   3'- -GGCUCU----UGGCCUUGCUGUa--C-------------GGCAGc -5'
18759 3' -53.5 NC_004683.1 + 38661 0.67 0.818127
Target:  5'- gCGAGGGCU-GAACGugAUGCgcucgcuggccgCGUCGa -3'
miRNA:   3'- gGCUCUUGGcCUUGCugUACG------------GCAGC- -5'
18759 3' -53.5 NC_004683.1 + 4214 0.67 0.818127
Target:  5'- cCCGAGAucggGCCGG--UGACGUGgCCGg-- -3'
miRNA:   3'- -GGCUCU----UGGCCuuGCUGUAC-GGCagc -5'
18759 3' -53.5 NC_004683.1 + 23355 0.67 0.818127
Target:  5'- gCCGGGGACCGG----GC-UGCgGUCGa -3'
miRNA:   3'- -GGCUCUUGGCCuugcUGuACGgCAGC- -5'
18759 3' -53.5 NC_004683.1 + 6736 0.67 0.808863
Target:  5'- gUCGAcGGCCcGGGCGGCcgcGUGCUGUCGc -3'
miRNA:   3'- -GGCUcUUGGcCUUGCUG---UACGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 42895 0.67 0.808863
Target:  5'- cCCGAGGuGCaCGGGcugaaGCgGACGguacGCCGUCGg -3'
miRNA:   3'- -GGCUCU-UG-GCCU-----UG-CUGUa---CGGCAGC- -5'
18759 3' -53.5 NC_004683.1 + 51325 0.67 0.799419
Target:  5'- gCCGAGGGCCuucuGCGACGgcuUGCCGa-- -3'
miRNA:   3'- -GGCUCUUGGccu-UGCUGU---ACGGCagc -5'
18759 3' -53.5 NC_004683.1 + 39649 0.67 0.799419
Target:  5'- cCCGAGGGCCGcuacguCGAgAUGCuuggaaCGUCGg -3'
miRNA:   3'- -GGCUCUUGGCcuu---GCUgUACG------GCAGC- -5'
18759 3' -53.5 NC_004683.1 + 53101 0.67 0.799419
Target:  5'- cCCGAGccaucGGCCGGGGCGuuc-GUCGUUGg -3'
miRNA:   3'- -GGCUC-----UUGGCCUUGCuguaCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.