Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18759 | 3' | -53.5 | NC_004683.1 | + | 6983 | 0.68 | 0.739533 |
Target: 5'- aCCGuGGguaGCCGuGACGACGaucgcGCCGUCGc -3' miRNA: 3'- -GGCuCU---UGGCcUUGCUGUa----CGGCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 56861 | 0.66 | 0.869379 |
Target: 5'- cUCGGGAcCuCGGuAGCGGCugcgGUCGUCGu -3' miRNA: 3'- -GGCUCUuG-GCC-UUGCUGua--CGGCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 13786 | 0.66 | 0.844733 |
Target: 5'- aCCGGcGaAACCGGAuGCGACcuUGCCGa-- -3' miRNA: 3'- -GGCU-C-UUGGCCU-UGCUGu-ACGGCagc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 49443 | 0.67 | 0.827199 |
Target: 5'- uCCGGGGcagguGCaGGGGC-ACcgGCCGUCGu -3' miRNA: 3'- -GGCUCU-----UGgCCUUGcUGuaCGGCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 11373 | 0.66 | 0.853178 |
Target: 5'- gCCGAGAuCgCGGAACuugGUGCCGUa- -3' miRNA: 3'- -GGCUCUuG-GCCUUGcugUACGGCAgc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 37006 | 0.67 | 0.826301 |
Target: 5'- uCCGGGAuaccGCCGGGGCGAUGgcgGauucucgaccacaCCGUCu -3' miRNA: 3'- -GGCUCU----UGGCCUUGCUGUa--C-------------GGCAGc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 21614 | 0.74 | 0.415935 |
Target: 5'- gUGAGGgcgGCUGGGGCGGCAacuggGCCGUCu -3' miRNA: 3'- gGCUCU---UGGCCUUGCUGUa----CGGCAGc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 13247 | 0.71 | 0.610664 |
Target: 5'- cCCGucGACCGcauCGGCGUcGCCGUCGa -3' miRNA: 3'- -GGCucUUGGCcuuGCUGUA-CGGCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 45787 | 0.71 | 0.610664 |
Target: 5'- aUCGAGAuccCCGGcGugGAgGUGCgCGUCGc -3' miRNA: 3'- -GGCUCUu--GGCC-UugCUgUACG-GCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 48955 | 0.71 | 0.567447 |
Target: 5'- aUCGAGAACCGGAcccGCaACAUcGCCGg-- -3' miRNA: 3'- -GGCUCUUGGCCU---UGcUGUA-CGGCagc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 43125 | 0.69 | 0.675837 |
Target: 5'- cCCGAG-ACCGGcguGCGGCugcgugGCCGgaUCGa -3' miRNA: 3'- -GGCUCuUGGCCu--UGCUGua----CGGC--AGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 12232 | 0.69 | 0.686616 |
Target: 5'- gCCG-GGGCgGGAGCGcccgGCGUGCCGa-- -3' miRNA: 3'- -GGCuCUUGgCCUUGC----UGUACGGCagc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 15947 | 0.66 | 0.844733 |
Target: 5'- aCGAGuuCUGGGACGACAUcgagaauucggcGCCGa-- -3' miRNA: 3'- gGCUCuuGGCCUUGCUGUA------------CGGCagc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 44758 | 0.66 | 0.856492 |
Target: 5'- gCCGAGAuccaaaccuacgacCCGGcGGCGGCggGCCG-CGu -3' miRNA: 3'- -GGCUCUu-------------GGCC-UUGCUGuaCGGCaGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 38892 | 0.66 | 0.869379 |
Target: 5'- cCCGAuGAGCUGGGgaugccGCGGaAUGCuCGUCu -3' miRNA: 3'- -GGCU-CUUGGCCU------UGCUgUACG-GCAGc -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 6736 | 0.67 | 0.808863 |
Target: 5'- gUCGAcGGCCcGGGCGGCcgcGUGCUGUCGc -3' miRNA: 3'- -GGCUcUUGGcCUUGCUG---UACGGCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 51167 | 0.66 | 0.844733 |
Target: 5'- gCG-GAACUGGAucCGGCGcGCCGcCGa -3' miRNA: 3'- gGCuCUUGGCCUu-GCUGUaCGGCaGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 53101 | 0.67 | 0.799419 |
Target: 5'- cCCGAGccaucGGCCGGGGCGuuc-GUCGUUGg -3' miRNA: 3'- -GGCUC-----UUGGCCUUGCuguaCGGCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 39649 | 0.67 | 0.799419 |
Target: 5'- cCCGAGGGCCGcuacguCGAgAUGCuuggaaCGUCGg -3' miRNA: 3'- -GGCUCUUGGCcuu---GCUgUACG------GCAGC- -5' |
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18759 | 3' | -53.5 | NC_004683.1 | + | 51228 | 0.68 | 0.749843 |
Target: 5'- gCGucGAACgGGcuCGGCAaGCCGUCGc -3' miRNA: 3'- gGCu-CUUGgCCuuGCUGUaCGGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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