miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 24992 0.67 0.480083
Target:  5'- -uGAUCAGCCGCagcagccacaGCGGCCgGgucuugcGGGCg -3'
miRNA:   3'- gcUUGGUCGGCG----------CGCUGGgCaa-----CCCG- -5'
18762 3' -59.6 NC_004683.1 + 13848 0.67 0.480083
Target:  5'- uGAGCCGGguucggguuCgGCGgGGCCUGUUGcccGGCg -3'
miRNA:   3'- gCUUGGUC---------GgCGCgCUGGGCAAC---CCG- -5'
18762 3' -59.6 NC_004683.1 + 16849 0.67 0.480083
Target:  5'- cCGAACCGuacgcgaucGUCGuCGCG-CCCGagccGGGCg -3'
miRNA:   3'- -GCUUGGU---------CGGC-GCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 39810 0.67 0.480083
Target:  5'- gGAGCCAGCgGU-CGAUgaGUUGGGg -3'
miRNA:   3'- gCUUGGUCGgCGcGCUGggCAACCCg -5'
18762 3' -59.6 NC_004683.1 + 12123 0.67 0.470355
Target:  5'- gGGGCCAGCCuccgGCGGuagcCCCGcgcGGGCg -3'
miRNA:   3'- gCUUGGUCGGcg--CGCU----GGGCaa-CCCG- -5'
18762 3' -59.6 NC_004683.1 + 50590 0.67 0.470355
Target:  5'- aGcACCAGCCGCGCGuCCCa------ -3'
miRNA:   3'- gCuUGGUCGGCGCGCuGGGcaacccg -5'
18762 3' -59.6 NC_004683.1 + 20399 0.67 0.470355
Target:  5'- -cAGCUGGCgGCGC-ACCCGggGcGGCc -3'
miRNA:   3'- gcUUGGUCGgCGCGcUGGGCaaC-CCG- -5'
18762 3' -59.6 NC_004683.1 + 31061 0.67 0.464568
Target:  5'- aCGAGCCAcugccaauuaCCGCGCGcaguagucaucaccCCCGUggcGGGCa -3'
miRNA:   3'- -GCUUGGUc---------GGCGCGCu-------------GGGCAa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 8566 0.67 0.46073
Target:  5'- --cACCAGCCGCGgGAgUCGUgccGGUc -3'
miRNA:   3'- gcuUGGUCGGCGCgCUgGGCAac-CCG- -5'
18762 3' -59.6 NC_004683.1 + 48871 0.67 0.46073
Target:  5'- gGGACCAGuacCCGgagGUGACCCGgugaGGGUa -3'
miRNA:   3'- gCUUGGUC---GGCg--CGCUGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 6836 0.67 0.46073
Target:  5'- uGGACCGGUCGCGCcGCaa---GGGCa -3'
miRNA:   3'- gCUUGGUCGGCGCGcUGggcaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 47305 0.67 0.457862
Target:  5'- cCGAGCCAGCC-CGCGAUggucgagcaggucgCCGU-GGuGUu -3'
miRNA:   3'- -GCUUGGUCGGcGCGCUG--------------GGCAaCC-CG- -5'
18762 3' -59.6 NC_004683.1 + 24065 0.67 0.451209
Target:  5'- gGGAgCAGCUGUuCGGCCCGcaggccaaGGGCu -3'
miRNA:   3'- gCUUgGUCGGCGcGCUGGGCaa------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 13889 0.67 0.450263
Target:  5'- uGAucgGCUGGCCGgGCugcugcuGGCCCGgcugacUGGGCu -3'
miRNA:   3'- gCU---UGGUCGGCgCG-------CUGGGCa-----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 8316 0.67 0.450263
Target:  5'- -cGACCAGaUCGUGCGcuacaccGCCCGguaucagcUGGGCa -3'
miRNA:   3'- gcUUGGUC-GGCGCGC-------UGGGCa-------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 28397 0.67 0.431574
Target:  5'- uGGACgCAGCCgggGCGCGGgCgGUuccgcucacgcucUGGGCa -3'
miRNA:   3'- gCUUG-GUCGG---CGCGCUgGgCA-------------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 37722 0.67 0.431574
Target:  5'- aGGACCGGCUGCGaagucacUGAUCCaagagaUGGGCc -3'
miRNA:   3'- gCUUGGUCGGCGC-------GCUGGGca----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 46354 0.67 0.431574
Target:  5'- uGAugCAGUCGUggaagcugccggaGCGGgcCCCGUgGGGCc -3'
miRNA:   3'- gCUugGUCGGCG-------------CGCU--GGGCAaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 24160 0.68 0.423313
Target:  5'- gCGGGCCAGCC-CuuGGCCUGc-GGGCc -3'
miRNA:   3'- -GCUUGGUCGGcGcgCUGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 46637 0.68 0.4053
Target:  5'- -cGAUCAGCCGacccgcaccaUGaCGACCCGUaacgagacUGGGCu -3'
miRNA:   3'- gcUUGGUCGGC----------GC-GCUGGGCA--------ACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.