miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 6326 0.69 0.354262
Target:  5'- gGGAUCGcCCGCGCccccucgauGACCUGgUGGGCu -3'
miRNA:   3'- gCUUGGUcGGCGCG---------CUGGGCaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 1216 0.69 0.354262
Target:  5'- uCGGACCGGCCGCGCuuGACgaGcUUGuGCa -3'
miRNA:   3'- -GCUUGGUCGGCGCG--CUGggC-AACcCG- -5'
18762 3' -59.6 NC_004683.1 + 9321 0.69 0.362446
Target:  5'- aCGAgccgucGCCGGCCaGCGCGuCCCaGgcGGGa -3'
miRNA:   3'- -GCU------UGGUCGG-CGCGCuGGG-CaaCCCg -5'
18762 3' -59.6 NC_004683.1 + 16964 0.69 0.370761
Target:  5'- aCGAcACCAGCgGCGaguccucGCCCGgcucGGGCg -3'
miRNA:   3'- -GCU-UGGUCGgCGCgc-----UGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 49123 0.68 0.379206
Target:  5'- uCGGGCgcgugcaucggUAGCCGUGCGAgcgcuuCCCGgucGGGCu -3'
miRNA:   3'- -GCUUG-----------GUCGGCGCGCU------GGGCaa-CCCG- -5'
18762 3' -59.6 NC_004683.1 + 5827 0.68 0.387778
Target:  5'- aCGAGCagcucGCCGCGCGGCaCCGccgccaaGGCg -3'
miRNA:   3'- -GCUUGgu---CGGCGCGCUG-GGCaac----CCG- -5'
18762 3' -59.6 NC_004683.1 + 22074 0.68 0.396477
Target:  5'- aGAACCaugcuuGGCCGCGCGcgccagcaccACCCGccuGGCc -3'
miRNA:   3'- gCUUGG------UCGGCGCGC----------UGGGCaacCCG- -5'
18762 3' -59.6 NC_004683.1 + 12747 0.68 0.396477
Target:  5'- uCGggUUAGCCGCGCuGAUcgCCGacagcGGGCc -3'
miRNA:   3'- -GCuuGGUCGGCGCG-CUG--GGCaa---CCCG- -5'
18762 3' -59.6 NC_004683.1 + 22754 0.68 0.396477
Target:  5'- gGGugCAGCCGC-CGACaucaCCGa-GGGCg -3'
miRNA:   3'- gCUugGUCGGCGcGCUG----GGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 5110 0.68 0.4053
Target:  5'- aGGGCgAGCUGCGUG-CCC---GGGCg -3'
miRNA:   3'- gCUUGgUCGGCGCGCuGGGcaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 41710 0.68 0.4053
Target:  5'- aGAguGCCAuguucGCCGCGCG-CCCGgauccGGCu -3'
miRNA:   3'- gCU--UGGU-----CGGCGCGCuGGGCaac--CCG- -5'
18762 3' -59.6 NC_004683.1 + 12077 0.68 0.4053
Target:  5'- uCGAuACCGGCuagcugauCGgGCGAcagcCCCGgugUGGGCa -3'
miRNA:   3'- -GCU-UGGUCG--------GCgCGCU----GGGCa--ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 2427 0.68 0.4053
Target:  5'- cCGAACCcguAGCCGaugccguugaaCGCGaACUCGUucagcaucUGGGCg -3'
miRNA:   3'- -GCUUGG---UCGGC-----------GCGC-UGGGCA--------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 46637 0.68 0.4053
Target:  5'- -cGAUCAGCCGacccgcaccaUGaCGACCCGUaacgagacUGGGCu -3'
miRNA:   3'- gcUUGGUCGGC----------GC-GCUGGGCA--------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 24160 0.68 0.423313
Target:  5'- gCGGGCCAGCC-CuuGGCCUGc-GGGCc -3'
miRNA:   3'- -GCUUGGUCGGcGcgCUGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 28397 0.67 0.431574
Target:  5'- uGGACgCAGCCgggGCGCGGgCgGUuccgcucacgcucUGGGCa -3'
miRNA:   3'- gCUUG-GUCGG---CGCGCUgGgCA-------------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 37722 0.67 0.431574
Target:  5'- aGGACCGGCUGCGaagucacUGAUCCaagagaUGGGCc -3'
miRNA:   3'- gCUUGGUCGGCGC-------GCUGGGca----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 46354 0.67 0.431574
Target:  5'- uGAugCAGUCGUggaagcugccggaGCGGgcCCCGUgGGGCc -3'
miRNA:   3'- gCUugGUCGGCG-------------CGCU--GGGCAaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 8316 0.67 0.450263
Target:  5'- -cGACCAGaUCGUGCGcuacaccGCCCGguaucagcUGGGCa -3'
miRNA:   3'- gcUUGGUC-GGCGCGC-------UGGGCa-------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 13889 0.67 0.450263
Target:  5'- uGAucgGCUGGCCGgGCugcugcuGGCCCGgcugacUGGGCu -3'
miRNA:   3'- gCU---UGGUCGGCgCG-------CUGGGCa-----ACCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.