miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 6215 1.1 0.000382
Target:  5'- gCGAACCAGCCGCGCGACCCGUUGGGCc -3'
miRNA:   3'- -GCUUGGUCGGCGCGCUGGGCAACCCG- -5'
18762 3' -59.6 NC_004683.1 + 6688 0.77 0.101402
Target:  5'- gCGAACUGGCCGCGC-ACCUuGgcGGGCa -3'
miRNA:   3'- -GCUUGGUCGGCGCGcUGGG-CaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 51722 0.76 0.12933
Target:  5'- aCGAACCccGGCaGCGCGACCgCGggcucggGGGCg -3'
miRNA:   3'- -GCUUGG--UCGgCGCGCUGG-GCaa-----CCCG- -5'
18762 3' -59.6 NC_004683.1 + 5534 0.75 0.147772
Target:  5'- --cGCCGGUgGCGaCGACCUGgcGGGCg -3'
miRNA:   3'- gcuUGGUCGgCGC-GCUGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 25936 0.74 0.164219
Target:  5'- cCGcAGCCAGCCGuCGCGAaCCCaggUGGcGCa -3'
miRNA:   3'- -GC-UUGGUCGGC-GCGCU-GGGca-ACC-CG- -5'
18762 3' -59.6 NC_004683.1 + 46301 0.74 0.16858
Target:  5'- -uGACCGGCUGaCGCGGCCCGa--GGCg -3'
miRNA:   3'- gcUUGGUCGGC-GCGCUGGGCaacCCG- -5'
18762 3' -59.6 NC_004683.1 + 51869 0.73 0.182292
Target:  5'- uCGAgcugcACCA-CCGCGCGAUCCGUgauGGCg -3'
miRNA:   3'- -GCU-----UGGUcGGCGCGCUGGGCAac-CCG- -5'
18762 3' -59.6 NC_004683.1 + 38573 0.71 0.266372
Target:  5'- gCGAACCGGCCGCauaaGAaaccCCCGccggacgGGGCg -3'
miRNA:   3'- -GCUUGGUCGGCGcg--CU----GGGCaa-----CCCG- -5'
18762 3' -59.6 NC_004683.1 + 12017 0.71 0.27297
Target:  5'- uCGAcGCgGGCCaGCGCG-CCCGcgcgGGGCu -3'
miRNA:   3'- -GCU-UGgUCGG-CGCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 6136 0.71 0.282426
Target:  5'- -cAACgGGUCGCGCGGCUgGUucgcguacuaccgcaUGGGCg -3'
miRNA:   3'- gcUUGgUCGGCGCGCUGGgCA---------------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 34016 0.7 0.286558
Target:  5'- cCGAuCCAGCCGaCGCGGCCCGc----- -3'
miRNA:   3'- -GCUuGGUCGGC-GCGCUGGGCaacccg -5'
18762 3' -59.6 NC_004683.1 + 3252 0.7 0.305011
Target:  5'- aGGGCCuGGCCGCgGCGACCUacucaaacuacGGGCa -3'
miRNA:   3'- gCUUGG-UCGGCG-CGCUGGGcaa--------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 30833 0.7 0.30793
Target:  5'- cCGGugCGGUCGacaGCGGCCguCGaUGGGCu -3'
miRNA:   3'- -GCUugGUCGGCg--CGCUGG--GCaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 47214 0.7 0.322842
Target:  5'- --cACCGGCCGCGCGAgacCUCGUcGGuGUc -3'
miRNA:   3'- gcuUGGUCGGCGCGCU---GGGCAaCC-CG- -5'
18762 3' -59.6 NC_004683.1 + 27915 0.7 0.322842
Target:  5'- cCGcACUAGCuCGCGCaucACUCGUUcGGGCa -3'
miRNA:   3'- -GCuUGGUCG-GCGCGc--UGGGCAA-CCCG- -5'
18762 3' -59.6 NC_004683.1 + 52562 0.69 0.330498
Target:  5'- cCGAGCCAGCgCGCGaGACCCugcgUGGu- -3'
miRNA:   3'- -GCUUGGUCG-GCGCgCUGGGca--ACCcg -5'
18762 3' -59.6 NC_004683.1 + 241 0.69 0.330498
Target:  5'- gCGAugCcGCCGCuGCuGCCCGcggcgGGGCu -3'
miRNA:   3'- -GCUugGuCGGCG-CGcUGGGCaa---CCCG- -5'
18762 3' -59.6 NC_004683.1 + 40411 0.69 0.346208
Target:  5'- -cGACCuGCCGCGCuccaccGAgCCGcagugUGGGCa -3'
miRNA:   3'- gcUUGGuCGGCGCG------CUgGGCa----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 12621 0.69 0.346208
Target:  5'- gCGAuucgucGCCAGCCuggcCGCGGCgCCGcugcUGGGCc -3'
miRNA:   3'- -GCU------UGGUCGGc---GCGCUG-GGCa---ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 25660 0.69 0.351832
Target:  5'- uGAACUgcgacGGCCGC-CGugCCGUUgccgaccgcggccaGGGCg -3'
miRNA:   3'- gCUUGG-----UCGGCGcGCugGGCAA--------------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.