miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 241 0.69 0.330498
Target:  5'- gCGAugCcGCCGCuGCuGCCCGcggcgGGGCu -3'
miRNA:   3'- -GCUugGuCGGCG-CGcUGGGCaa---CCCG- -5'
18762 3' -59.6 NC_004683.1 + 1216 0.69 0.354262
Target:  5'- uCGGACCGGCCGCGCuuGACgaGcUUGuGCa -3'
miRNA:   3'- -GCUUGGUCGGCGCG--CUGggC-AACcCG- -5'
18762 3' -59.6 NC_004683.1 + 1764 0.66 0.509829
Target:  5'- gCGcGCCGGCCGCGCuGCgaUCGUcGaGGCc -3'
miRNA:   3'- -GCuUGGUCGGCGCGcUG--GGCAaC-CCG- -5'
18762 3' -59.6 NC_004683.1 + 2427 0.68 0.4053
Target:  5'- cCGAACCcguAGCCGaugccguugaaCGCGaACUCGUucagcaucUGGGCg -3'
miRNA:   3'- -GCUUGG---UCGGC-----------GCGC-UGGGCA--------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 3036 0.66 0.54032
Target:  5'- cCGAcCCGGCCGCgGUGAagaagUGGGCc -3'
miRNA:   3'- -GCUuGGUCGGCG-CGCUgggcaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 3252 0.7 0.305011
Target:  5'- aGGGCCuGGCCGCgGCGACCUacucaaacuacGGGCa -3'
miRNA:   3'- gCUUGG-UCGGCG-CGCUGGGcaa--------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 4635 0.66 0.499824
Target:  5'- uCGcACCGGCCuGCGUG-CCauCGgcaUGGGCa -3'
miRNA:   3'- -GCuUGGUCGG-CGCGCuGG--GCa--ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 4943 0.66 0.498828
Target:  5'- gCGGcgGCCAGCgGCGCaugcgcgucgaGGCCgGUUccucgcaGGGCg -3'
miRNA:   3'- -GCU--UGGUCGgCGCG-----------CUGGgCAA-------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 5110 0.68 0.4053
Target:  5'- aGGGCgAGCUGCGUG-CCC---GGGCg -3'
miRNA:   3'- gCUUGgUCGGCGCGCuGGGcaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 5534 0.75 0.147772
Target:  5'- --cGCCGGUgGCGaCGACCUGgcGGGCg -3'
miRNA:   3'- gcuUGGUCGgCGC-GCUGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 5827 0.68 0.387778
Target:  5'- aCGAGCagcucGCCGCGCGGCaCCGccgccaaGGCg -3'
miRNA:   3'- -GCUUGgu---CGGCGCGCUG-GGCaac----CCG- -5'
18762 3' -59.6 NC_004683.1 + 6136 0.71 0.282426
Target:  5'- -cAACgGGUCGCGCGGCUgGUucgcguacuaccgcaUGGGCg -3'
miRNA:   3'- gcUUGgUCGGCGCGCUGGgCA---------------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 6215 1.1 0.000382
Target:  5'- gCGAACCAGCCGCGCGACCCGUUGGGCc -3'
miRNA:   3'- -GCUUGGUCGGCGCGCUGGGCAACCCG- -5'
18762 3' -59.6 NC_004683.1 + 6326 0.69 0.354262
Target:  5'- gGGAUCGcCCGCGCccccucgauGACCUGgUGGGCu -3'
miRNA:   3'- gCUUGGUcGGCGCG---------CUGGGCaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 6688 0.77 0.101402
Target:  5'- gCGAACUGGCCGCGC-ACCUuGgcGGGCa -3'
miRNA:   3'- -GCUUGGUCGGCGCGcUGGG-CaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 6836 0.67 0.46073
Target:  5'- uGGACCGGUCGCGCcGCaa---GGGCa -3'
miRNA:   3'- gCUUGGUCGGCGCGcUGggcaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 8316 0.67 0.450263
Target:  5'- -cGACCAGaUCGUGCGcuacaccGCCCGguaucagcUGGGCa -3'
miRNA:   3'- gcUUGGUC-GGCGCGC-------UGGGCa-------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 8471 0.66 0.519917
Target:  5'- uGGGCUGGau-CGCGGCCCGcgcgGGGCc -3'
miRNA:   3'- gCUUGGUCggcGCGCUGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 8566 0.67 0.46073
Target:  5'- --cACCAGCCGCGgGAgUCGUgccGGUc -3'
miRNA:   3'- gcuUGGUCGGCGCgCUgGGCAac-CCG- -5'
18762 3' -59.6 NC_004683.1 + 9242 0.66 0.497834
Target:  5'- aCGcGCUGGCCgGCGaCGGCUCGUaagacccucgcgGGGCg -3'
miRNA:   3'- -GCuUGGUCGG-CGC-GCUGGGCAa-----------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.