miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 56050 0.66 0.530083
Target:  5'- uGAGCgAGCCGUGUGG--UG-UGGGCg -3'
miRNA:   3'- gCUUGgUCGGCGCGCUggGCaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 52562 0.69 0.330498
Target:  5'- cCGAGCCAGCgCGCGaGACCCugcgUGGu- -3'
miRNA:   3'- -GCUUGGUCG-GCGCgCUGGGca--ACCcg -5'
18762 3' -59.6 NC_004683.1 + 52328 0.66 0.519917
Target:  5'- uGcGCCuugguGCCGCGcCGGCCCGggucgccGaGGCg -3'
miRNA:   3'- gCuUGGu----CGGCGC-GCUGGGCaa-----C-CCG- -5'
18762 3' -59.6 NC_004683.1 + 52159 0.66 0.54032
Target:  5'- --cACgCAGCUGCGUGACaCGUUGcGCg -3'
miRNA:   3'- gcuUG-GUCGGCGCGCUGgGCAACcCG- -5'
18762 3' -59.6 NC_004683.1 + 51869 0.73 0.182292
Target:  5'- uCGAgcugcACCA-CCGCGCGAUCCGUgauGGCg -3'
miRNA:   3'- -GCU-----UGGUcGGCGCGCUGGGCAac-CCG- -5'
18762 3' -59.6 NC_004683.1 + 51722 0.76 0.12933
Target:  5'- aCGAACCccGGCaGCGCGACCgCGggcucggGGGCg -3'
miRNA:   3'- -GCUUGG--UCGgCGCGCUGG-GCaa-----CCCG- -5'
18762 3' -59.6 NC_004683.1 + 50590 0.67 0.470355
Target:  5'- aGcACCAGCCGCGCGuCCCa------ -3'
miRNA:   3'- gCuUGGUCGGCGCGCuGGGcaacccg -5'
18762 3' -59.6 NC_004683.1 + 49123 0.68 0.379206
Target:  5'- uCGGGCgcgugcaucggUAGCCGUGCGAgcgcuuCCCGgucGGGCu -3'
miRNA:   3'- -GCUUG-----------GUCGGCGCGCU------GGGCaa-CCCG- -5'
18762 3' -59.6 NC_004683.1 + 48871 0.67 0.46073
Target:  5'- gGGACCAGuacCCGgagGUGACCCGgugaGGGUa -3'
miRNA:   3'- gCUUGGUC---GGCg--CGCUGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 47305 0.67 0.457862
Target:  5'- cCGAGCCAGCC-CGCGAUggucgagcaggucgCCGU-GGuGUu -3'
miRNA:   3'- -GCUUGGUCGGcGCGCUG--------------GGCAaCC-CG- -5'
18762 3' -59.6 NC_004683.1 + 47300 0.66 0.519917
Target:  5'- aCGAcACCgacgaGGUcuCGCGCGGCCgGUgGGGUg -3'
miRNA:   3'- -GCU-UGG-----UCG--GCGCGCUGGgCAaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 47214 0.7 0.322842
Target:  5'- --cACCGGCCGCGCGAgacCUCGUcGGuGUc -3'
miRNA:   3'- gcuUGGUCGGCGCGCU---GGGCAaCC-CG- -5'
18762 3' -59.6 NC_004683.1 + 46637 0.68 0.4053
Target:  5'- -cGAUCAGCCGacccgcaccaUGaCGACCCGUaacgagacUGGGCu -3'
miRNA:   3'- gcUUGGUCGGC----------GC-GCUGGGCA--------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 46354 0.67 0.431574
Target:  5'- uGAugCAGUCGUggaagcugccggaGCGGgcCCCGUgGGGCc -3'
miRNA:   3'- gCUugGUCGGCG-------------CGCU--GGGCAaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 46301 0.74 0.16858
Target:  5'- -uGACCGGCUGaCGCGGCCCGa--GGCg -3'
miRNA:   3'- gcUUGGUCGGC-GCGCUGGGCaacCCG- -5'
18762 3' -59.6 NC_004683.1 + 41710 0.68 0.4053
Target:  5'- aGAguGCCAuguucGCCGCGCG-CCCGgauccGGCu -3'
miRNA:   3'- gCU--UGGU-----CGGCGCGCuGGGCaac--CCG- -5'
18762 3' -59.6 NC_004683.1 + 40411 0.69 0.346208
Target:  5'- -cGACCuGCCGCGCuccaccGAgCCGcagugUGGGCa -3'
miRNA:   3'- gcUUGGuCGGCGCG------CUgGGCa----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 39810 0.67 0.480083
Target:  5'- gGAGCCAGCgGU-CGAUgaGUUGGGg -3'
miRNA:   3'- gCUUGGUCGgCGcGCUGggCAACCCg -5'
18762 3' -59.6 NC_004683.1 + 39602 0.66 0.48892
Target:  5'- aGGACCu-CUGgGCG-CCCGUuccggggUGGGCg -3'
miRNA:   3'- gCUUGGucGGCgCGCuGGGCA-------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 38573 0.71 0.266372
Target:  5'- gCGAACCGGCCGCauaaGAaaccCCCGccggacgGGGCg -3'
miRNA:   3'- -GCUUGGUCGGCGcg--CU----GGGCaa-----CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.