miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 6836 0.67 0.46073
Target:  5'- uGGACCGGUCGCGCcGCaa---GGGCa -3'
miRNA:   3'- gCUUGGUCGGCGCGcUGggcaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 5110 0.68 0.4053
Target:  5'- aGGGCgAGCUGCGUG-CCC---GGGCg -3'
miRNA:   3'- gCUUGgUCGGCGCGCuGGGcaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 46637 0.68 0.4053
Target:  5'- -cGAUCAGCCGacccgcaccaUGaCGACCCGUaacgagacUGGGCu -3'
miRNA:   3'- gcUUGGUCGGC----------GC-GCUGGGCA--------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 28397 0.67 0.431574
Target:  5'- uGGACgCAGCCgggGCGCGGgCgGUuccgcucacgcucUGGGCa -3'
miRNA:   3'- gCUUG-GUCGG---CGCGCUgGgCA-------------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 46354 0.67 0.431574
Target:  5'- uGAugCAGUCGUggaagcugccggaGCGGgcCCCGUgGGGCc -3'
miRNA:   3'- gCUugGUCGGCG-------------CGCU--GGGCAaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 8316 0.67 0.450263
Target:  5'- -cGACCAGaUCGUGCGcuacaccGCCCGguaucagcUGGGCa -3'
miRNA:   3'- gcUUGGUC-GGCGCGC-------UGGGCa-------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 24065 0.67 0.451209
Target:  5'- gGGAgCAGCUGUuCGGCCCGcaggccaaGGGCu -3'
miRNA:   3'- gCUUgGUCGGCGcGCUGGGCaa------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 47305 0.67 0.457862
Target:  5'- cCGAGCCAGCC-CGCGAUggucgagcaggucgCCGU-GGuGUu -3'
miRNA:   3'- -GCUUGGUCGGcGCGCUG--------------GGCAaCC-CG- -5'
18762 3' -59.6 NC_004683.1 + 48871 0.67 0.46073
Target:  5'- gGGACCAGuacCCGgagGUGACCCGgugaGGGUa -3'
miRNA:   3'- gCUUGGUC---GGCg--CGCUGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 22754 0.68 0.396477
Target:  5'- gGGugCAGCCGC-CGACaucaCCGa-GGGCg -3'
miRNA:   3'- gCUugGUCGGCGcGCUG----GGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 5827 0.68 0.387778
Target:  5'- aCGAGCagcucGCCGCGCGGCaCCGccgccaaGGCg -3'
miRNA:   3'- -GCUUGgu---CGGCGCGCUG-GGCaac----CCG- -5'
18762 3' -59.6 NC_004683.1 + 40411 0.69 0.346208
Target:  5'- -cGACCuGCCGCGCuccaccGAgCCGcagugUGGGCa -3'
miRNA:   3'- gcUUGGuCGGCGCG------CUgGGCa----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 51869 0.73 0.182292
Target:  5'- uCGAgcugcACCA-CCGCGCGAUCCGUgauGGCg -3'
miRNA:   3'- -GCU-----UGGUcGGCGCGCUGGGCAac-CCG- -5'
18762 3' -59.6 NC_004683.1 + 38573 0.71 0.266372
Target:  5'- gCGAACCGGCCGCauaaGAaaccCCCGccggacgGGGCg -3'
miRNA:   3'- -GCUUGGUCGGCGcg--CU----GGGCaa-----CCCG- -5'
18762 3' -59.6 NC_004683.1 + 12017 0.71 0.27297
Target:  5'- uCGAcGCgGGCCaGCGCG-CCCGcgcgGGGCu -3'
miRNA:   3'- -GCU-UGgUCGG-CGCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 6136 0.71 0.282426
Target:  5'- -cAACgGGUCGCGCGGCUgGUucgcguacuaccgcaUGGGCg -3'
miRNA:   3'- gcUUGgUCGGCGCGCUGGgCA---------------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 3252 0.7 0.305011
Target:  5'- aGGGCCuGGCCGCgGCGACCUacucaaacuacGGGCa -3'
miRNA:   3'- gCUUGG-UCGGCG-CGCUGGGcaa--------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 47214 0.7 0.322842
Target:  5'- --cACCGGCCGCGCGAgacCUCGUcGGuGUc -3'
miRNA:   3'- gcuUGGUCGGCGCGCU---GGGCAaCC-CG- -5'
18762 3' -59.6 NC_004683.1 + 241 0.69 0.330498
Target:  5'- gCGAugCcGCCGCuGCuGCCCGcggcgGGGCu -3'
miRNA:   3'- -GCUugGuCGGCG-CGcUGGGCaa---CCCG- -5'
18762 3' -59.6 NC_004683.1 + 12621 0.69 0.346208
Target:  5'- gCGAuucgucGCCAGCCuggcCGCGGCgCCGcugcUGGGCc -3'
miRNA:   3'- -GCU------UGGUCGGc---GCGCUG-GGCa---ACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.