miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 6215 1.1 0.000382
Target:  5'- gCGAACCAGCCGCGCGACCCGUUGGGCc -3'
miRNA:   3'- -GCUUGGUCGGCGCGCUGGGCAACCCG- -5'
18762 3' -59.6 NC_004683.1 + 41710 0.68 0.4053
Target:  5'- aGAguGCCAuguucGCCGCGCG-CCCGgauccGGCu -3'
miRNA:   3'- gCU--UGGU-----CGGCGCGCuGGGCaac--CCG- -5'
18762 3' -59.6 NC_004683.1 + 2427 0.68 0.4053
Target:  5'- cCGAACCcguAGCCGaugccguugaaCGCGaACUCGUucagcaucUGGGCg -3'
miRNA:   3'- -GCUUGG---UCGGC-----------GCGC-UGGGCA--------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 26291 0.66 0.530083
Target:  5'- ---uUCGGCgGCGUucucGACCUGgcGGGCg -3'
miRNA:   3'- gcuuGGUCGgCGCG----CUGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 25936 0.74 0.164219
Target:  5'- cCGcAGCCAGCCGuCGCGAaCCCaggUGGcGCa -3'
miRNA:   3'- -GC-UUGGUCGGC-GCGCU-GGGca-ACC-CG- -5'
18762 3' -59.6 NC_004683.1 + 34016 0.7 0.286558
Target:  5'- cCGAuCCAGCCGaCGCGGCCCGc----- -3'
miRNA:   3'- -GCUuGGUCGGC-GCGCUGGGCaacccg -5'
18762 3' -59.6 NC_004683.1 + 27915 0.7 0.322842
Target:  5'- cCGcACUAGCuCGCGCaucACUCGUUcGGGCa -3'
miRNA:   3'- -GCuUGGUCG-GCGCGc--UGGGCAA-CCCG- -5'
18762 3' -59.6 NC_004683.1 + 52562 0.69 0.330498
Target:  5'- cCGAGCCAGCgCGCGaGACCCugcgUGGu- -3'
miRNA:   3'- -GCUUGGUCG-GCGCgCUGGGca--ACCcg -5'
18762 3' -59.6 NC_004683.1 + 6326 0.69 0.354262
Target:  5'- gGGAUCGcCCGCGCccccucgauGACCUGgUGGGCu -3'
miRNA:   3'- gCUUGGUcGGCGCG---------CUGGGCaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 12747 0.68 0.396477
Target:  5'- uCGggUUAGCCGCGCuGAUcgCCGacagcGGGCc -3'
miRNA:   3'- -GCuuGGUCGGCGCG-CUG--GGCaa---CCCG- -5'
18762 3' -59.6 NC_004683.1 + 16964 0.69 0.370761
Target:  5'- aCGAcACCAGCgGCGaguccucGCCCGgcucGGGCg -3'
miRNA:   3'- -GCU-UGGUCGgCGCgc-----UGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 1216 0.69 0.354262
Target:  5'- uCGGACCGGCCGCGCuuGACgaGcUUGuGCa -3'
miRNA:   3'- -GCUUGGUCGGCGCG--CUGggC-AACcCG- -5'
18762 3' -59.6 NC_004683.1 + 6688 0.77 0.101402
Target:  5'- gCGAACUGGCCGCGC-ACCUuGgcGGGCa -3'
miRNA:   3'- -GCUUGGUCGGCGCGcUGGG-CaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 49123 0.68 0.379206
Target:  5'- uCGGGCgcgugcaucggUAGCCGUGCGAgcgcuuCCCGgucGGGCu -3'
miRNA:   3'- -GCUUG-----------GUCGGCGCGCU------GGGCaa-CCCG- -5'
18762 3' -59.6 NC_004683.1 + 51722 0.76 0.12933
Target:  5'- aCGAACCccGGCaGCGCGACCgCGggcucggGGGCg -3'
miRNA:   3'- -GCUUGG--UCGgCGCGCUGG-GCaa-----CCCG- -5'
18762 3' -59.6 NC_004683.1 + 25660 0.69 0.351832
Target:  5'- uGAACUgcgacGGCCGC-CGugCCGUUgccgaccgcggccaGGGCg -3'
miRNA:   3'- gCUUGG-----UCGGCGcGCugGGCAA--------------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 22074 0.68 0.396477
Target:  5'- aGAACCaugcuuGGCCGCGCGcgccagcaccACCCGccuGGCc -3'
miRNA:   3'- gCUUGG------UCGGCGCGC----------UGGGCaacCCG- -5'
18762 3' -59.6 NC_004683.1 + 12077 0.68 0.4053
Target:  5'- uCGAuACCGGCuagcugauCGgGCGAcagcCCCGgugUGGGCa -3'
miRNA:   3'- -GCU-UGGUCG--------GCgCGCU----GGGCa--ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 5534 0.75 0.147772
Target:  5'- --cGCCGGUgGCGaCGACCUGgcGGGCg -3'
miRNA:   3'- gcuUGGUCGgCGC-GCUGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 30833 0.7 0.30793
Target:  5'- cCGGugCGGUCGacaGCGGCCguCGaUGGGCu -3'
miRNA:   3'- -GCUugGUCGGCg--CGCUGG--GCaACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.