miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 9321 0.69 0.362446
Target:  5'- aCGAgccgucGCCGGCCaGCGCGuCCCaGgcGGGa -3'
miRNA:   3'- -GCU------UGGUCGG-CGCGCuGGG-CaaCCCg -5'
18762 3' -59.6 NC_004683.1 + 11933 0.66 0.489907
Target:  5'- gCGGGCguugauucaGGCCaGCGCG-CCCGcgcgGGGCu -3'
miRNA:   3'- -GCUUGg--------UCGG-CGCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 12017 0.71 0.27297
Target:  5'- uCGAcGCgGGCCaGCGCG-CCCGcgcgGGGCu -3'
miRNA:   3'- -GCU-UGgUCGG-CGCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 12077 0.68 0.4053
Target:  5'- uCGAuACCGGCuagcugauCGgGCGAcagcCCCGgugUGGGCa -3'
miRNA:   3'- -GCU-UGGUCG--------GCgCGCU----GGGCa--ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 12123 0.67 0.470355
Target:  5'- gGGGCCAGCCuccgGCGGuagcCCCGcgcGGGCg -3'
miRNA:   3'- gCUUGGUCGGcg--CGCU----GGGCaa-CCCG- -5'
18762 3' -59.6 NC_004683.1 + 12621 0.69 0.346208
Target:  5'- gCGAuucgucGCCAGCCuggcCGCGGCgCCGcugcUGGGCc -3'
miRNA:   3'- -GCU------UGGUCGGc---GCGCUG-GGCa---ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 12747 0.68 0.396477
Target:  5'- uCGggUUAGCCGCGCuGAUcgCCGacagcGGGCc -3'
miRNA:   3'- -GCuuGGUCGGCGCG-CUG--GGCaa---CCCG- -5'
18762 3' -59.6 NC_004683.1 + 12867 0.66 0.509829
Target:  5'- --cGCCAGCgGCGUauCCCGccGGGUa -3'
miRNA:   3'- gcuUGGUCGgCGCGcuGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 12981 0.67 0.480083
Target:  5'- gCGGACgaguGGCUGCGCGAgcgcggcuuCCUGccGGGCg -3'
miRNA:   3'- -GCUUGg---UCGGCGCGCU---------GGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 13848 0.67 0.480083
Target:  5'- uGAGCCGGguucggguuCgGCGgGGCCUGUUGcccGGCg -3'
miRNA:   3'- gCUUGGUC---------GgCGCgCUGGGCAAC---CCG- -5'
18762 3' -59.6 NC_004683.1 + 13889 0.67 0.450263
Target:  5'- uGAucgGCUGGCCGgGCugcugcuGGCCCGgcugacUGGGCu -3'
miRNA:   3'- gCU---UGGUCGGCgCG-------CUGGGCa-----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 14659 0.67 0.480083
Target:  5'- -cAGCgGGCC-UGCGACCCGUc-GGCg -3'
miRNA:   3'- gcUUGgUCGGcGCGCUGGGCAacCCG- -5'
18762 3' -59.6 NC_004683.1 + 16849 0.67 0.480083
Target:  5'- cCGAACCGuacgcgaucGUCGuCGCG-CCCGagccGGGCg -3'
miRNA:   3'- -GCUUGGU---------CGGC-GCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 16964 0.69 0.370761
Target:  5'- aCGAcACCAGCgGCGaguccucGCCCGgcucGGGCg -3'
miRNA:   3'- -GCU-UGGUCGgCGCgc-----UGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 20399 0.67 0.470355
Target:  5'- -cAGCUGGCgGCGC-ACCCGggGcGGCc -3'
miRNA:   3'- gcUUGGUCGgCGCGcUGGGCaaC-CCG- -5'
18762 3' -59.6 NC_004683.1 + 21151 0.67 0.480083
Target:  5'- cCGAAcaucCCGGCCGCG-GACCaCGgugucGGCa -3'
miRNA:   3'- -GCUU----GGUCGGCGCgCUGG-GCaac--CCG- -5'
18762 3' -59.6 NC_004683.1 + 22074 0.68 0.396477
Target:  5'- aGAACCaugcuuGGCCGCGCGcgccagcaccACCCGccuGGCc -3'
miRNA:   3'- gCUUGG------UCGGCGCGC----------UGGGCaacCCG- -5'
18762 3' -59.6 NC_004683.1 + 22754 0.68 0.396477
Target:  5'- gGGugCAGCCGC-CGACaucaCCGa-GGGCg -3'
miRNA:   3'- gCUugGUCGGCGcGCUG----GGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 24065 0.67 0.451209
Target:  5'- gGGAgCAGCUGUuCGGCCCGcaggccaaGGGCu -3'
miRNA:   3'- gCUUgGUCGGCGcGCUGGGCaa------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 24160 0.68 0.423313
Target:  5'- gCGGGCCAGCC-CuuGGCCUGc-GGGCc -3'
miRNA:   3'- -GCUUGGUCGGcGcgCUGGGCaaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.