Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18763 | 5' | -52.5 | NC_004683.1 | + | 42724 | 0.67 | 0.811256 |
Target: 5'- cUCAUCGgcGGccgccgaucucgUCGCGGGCGucguCGCGg- -3' miRNA: 3'- -AGUAGCuaCU------------AGUGCCCGCu---GUGCac -5' |
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18763 | 5' | -52.5 | NC_004683.1 | + | 34757 | 0.67 | 0.810305 |
Target: 5'- aUCAgCGAaggaggaacuuguUGGUCACGaGCGugACGUGc -3' miRNA: 3'- -AGUaGCU-------------ACUAGUGCcCGCugUGCAC- -5' |
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18763 | 5' | -52.5 | NC_004683.1 | + | 21779 | 0.67 | 0.836183 |
Target: 5'- cCAcCGAUGGUuggucggguacggcCACGGGCGGcgUugGUGg -3' miRNA: 3'- aGUaGCUACUA--------------GUGCCCGCU--GugCAC- -5' |
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18763 | 5' | -52.5 | NC_004683.1 | + | 22372 | 0.67 | 0.838858 |
Target: 5'- uUCAUUugcGAUCAUGGGCGAuucCACGg- -3' miRNA: 3'- -AGUAGcuaCUAGUGCCCGCU---GUGCac -5' |
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18763 | 5' | -52.5 | NC_004683.1 | + | 23472 | 0.66 | 0.867722 |
Target: 5'- cUCGUCGGUGccgcCGCGGGCguuguagagcgacucGACguagGCGUGg -3' miRNA: 3'- -AGUAGCUACua--GUGCCCG---------------CUG----UGCAC- -5' |
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18763 | 5' | -52.5 | NC_004683.1 | + | 52143 | 0.66 | 0.872525 |
Target: 5'- gCGUCGAcGAUCAgccaGGGCGcgucggGCACGg- -3' miRNA: 3'- aGUAGCUaCUAGUg---CCCGC------UGUGCac -5' |
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18763 | 5' | -52.5 | NC_004683.1 | + | 47151 | 0.66 | 0.872525 |
Target: 5'- aUCcUCGAcgucGAUCGuCGGGUGGC-CGUGc -3' miRNA: 3'- -AGuAGCUa---CUAGU-GCCCGCUGuGCAC- -5' |
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18763 | 5' | -52.5 | NC_004683.1 | + | 22995 | 0.66 | 0.887867 |
Target: 5'- cCGUCGuUGAUCACcaGCGACACc-- -3' miRNA: 3'- aGUAGCuACUAGUGccCGCUGUGcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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