miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18765 3' -64.2 NC_004683.1 + 52869 0.73 0.087835
Target:  5'- cUCGUCGGCCUCGgCGaGCAGCgCCu -3'
miRNA:   3'- aGGCAGCCGGAGCgGCcCGUCGaGGu -5'
18765 3' -64.2 NC_004683.1 + 52217 0.66 0.313629
Target:  5'- gCCGUCGucggucggguccGCCUCggcgacccggGCCGGcGCGGCaCCAa -3'
miRNA:   3'- aGGCAGC------------CGGAG----------CGGCC-CGUCGaGGU- -5'
18765 3' -64.2 NC_004683.1 + 49732 0.69 0.197707
Target:  5'- -gCGUCGGCCUUGCCaGGCuuguugAGUUCg- -3'
miRNA:   3'- agGCAGCCGGAGCGGcCCG------UCGAGgu -5'
18765 3' -64.2 NC_004683.1 + 49348 0.7 0.165428
Target:  5'- gCCG-CGaCgUCGUCGGGCAGCgUCCAc -3'
miRNA:   3'- aGGCaGCcGgAGCGGCCCGUCG-AGGU- -5'
18765 3' -64.2 NC_004683.1 + 46675 0.66 0.299322
Target:  5'- gCCGUcgCGGcCCUCGaCCGGcaccaGCAGCggcagCCAg -3'
miRNA:   3'- aGGCA--GCC-GGAGC-GGCC-----CGUCGa----GGU- -5'
18765 3' -64.2 NC_004683.1 + 46100 0.77 0.046937
Target:  5'- aCCGcUCGGCCgccgCGUCGGGCAGCacucgCCGa -3'
miRNA:   3'- aGGC-AGCCGGa---GCGGCCCGUCGa----GGU- -5'
18765 3' -64.2 NC_004683.1 + 41394 0.66 0.278818
Target:  5'- gCCGUCaGCCUgGgCGGGUGGCgcggugaggCCGg -3'
miRNA:   3'- aGGCAGcCGGAgCgGCCCGUCGa--------GGU- -5'
18765 3' -64.2 NC_004683.1 + 40959 0.67 0.25324
Target:  5'- cCCGUCGGCCaCGCCGaccuGGCcGCgcgcaucgCCGc -3'
miRNA:   3'- aGGCAGCCGGaGCGGC----CCGuCGa-------GGU- -5'
18765 3' -64.2 NC_004683.1 + 40883 0.66 0.278818
Target:  5'- cUCGcacUCGGCCUCGCCGucGGCgAGCgcgUCGg -3'
miRNA:   3'- aGGC---AGCCGGAGCGGC--CCG-UCGa--GGU- -5'
18765 3' -64.2 NC_004683.1 + 40308 0.67 0.24119
Target:  5'- gCCGagGGCaUCGCCGcGGCGGUgacCCGa -3'
miRNA:   3'- aGGCagCCGgAGCGGC-CCGUCGa--GGU- -5'
18765 3' -64.2 NC_004683.1 + 32232 0.68 0.218526
Target:  5'- aUCCGUCGGCUUaCGCCuacGCAGgUUCGa -3'
miRNA:   3'- -AGGCAGCCGGA-GCGGcc-CGUCgAGGU- -5'
18765 3' -64.2 NC_004683.1 + 31893 0.66 0.313629
Target:  5'- aUCGUCGGCuCggGCCGGuGCAGC-Ca- -3'
miRNA:   3'- aGGCAGCCG-GagCGGCC-CGUCGaGgu -5'
18765 3' -64.2 NC_004683.1 + 31538 0.69 0.197707
Target:  5'- -gCGUCGGCCaCGCCGGcG-AGCUCg- -3'
miRNA:   3'- agGCAGCCGGaGCGGCC-CgUCGAGgu -5'
18765 3' -64.2 NC_004683.1 + 29496 0.66 0.299322
Target:  5'- aCCGUCGGaCCUCaccaagggGCCGGGaacgugGGuUUCCAa -3'
miRNA:   3'- aGGCAGCC-GGAG--------CGGCCCg-----UC-GAGGU- -5'
18765 3' -64.2 NC_004683.1 + 28781 0.67 0.263867
Target:  5'- cUCGUCGacacgggaucugaaGCCggCGCUGGGCAGgcCUCCGc -3'
miRNA:   3'- aGGCAGC--------------CGGa-GCGGCCCGUC--GAGGU- -5'
18765 3' -64.2 NC_004683.1 + 28544 0.66 0.320974
Target:  5'- --aGUCGGCCguugCGCCGgGGCAauccccCUCCc -3'
miRNA:   3'- aggCAGCCGGa---GCGGC-CCGUc-----GAGGu -5'
18765 3' -64.2 NC_004683.1 + 27940 0.78 0.040895
Target:  5'- cCUGUaCGGCCccugccUCGCCGGGCGGCgCCAa -3'
miRNA:   3'- aGGCA-GCCGG------AGCGGCCCGUCGaGGU- -5'
18765 3' -64.2 NC_004683.1 + 26558 0.68 0.207892
Target:  5'- cUCGUCGGCguaucgggCUCGgCGGGCGGC-CUg -3'
miRNA:   3'- aGGCAGCCG--------GAGCgGCCCGUCGaGGu -5'
18765 3' -64.2 NC_004683.1 + 25874 0.66 0.313629
Target:  5'- gCUG-CGGCUcggcgucgaguUCGCCGGGCAGaCgcuggCCGc -3'
miRNA:   3'- aGGCaGCCGG-----------AGCGGCCCGUC-Ga----GGU- -5'
18765 3' -64.2 NC_004683.1 + 24182 0.69 0.187961
Target:  5'- gUCGUCGaCCUUGCCGaGCAGCgcgggCCAg -3'
miRNA:   3'- aGGCAGCcGGAGCGGCcCGUCGa----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.