miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 5' -56.6 NC_004683.1 + 10792 1.1 0.000531
Target:  5'- gAUACCAGACAGUGACCCACGCAGCCCg -3'
miRNA:   3'- -UAUGGUCUGUCACUGGGUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 13398 0.77 0.132024
Target:  5'- -gGCCAG--GGUGGCCCGCagGCGGCCCc -3'
miRNA:   3'- uaUGGUCugUCACUGGGUG--CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 21975 0.76 0.173305
Target:  5'- -gGCCAGGCGGguggugcUGGCgCGCGCGGCCa -3'
miRNA:   3'- uaUGGUCUGUC-------ACUGgGUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 426 0.75 0.204165
Target:  5'- -gGCgCAGGCGGUGGCUgGCGCGGCg- -3'
miRNA:   3'- uaUG-GUCUGUCACUGGgUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 29966 0.74 0.221025
Target:  5'- -cACCGuGACGGUGAUCCAgucgcCGUAGCCUu -3'
miRNA:   3'- uaUGGU-CUGUCACUGGGU-----GCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 17908 0.74 0.232913
Target:  5'- -cACaCAGcGCAGUGGCCCACcCGGCCa -3'
miRNA:   3'- uaUG-GUC-UGUCACUGGGUGcGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 8374 0.73 0.258301
Target:  5'- --uCCuGACGGUGAucggcCCCGCGCGGgCCg -3'
miRNA:   3'- uauGGuCUGUCACU-----GGGUGCGUCgGG- -5'
18767 5' -56.6 NC_004683.1 + 55971 0.73 0.264991
Target:  5'- -gGCCuugaauACGGUGGCgaCGCGCGGCCCg -3'
miRNA:   3'- uaUGGuc----UGUCACUGg-GUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 7347 0.72 0.278793
Target:  5'- -aGCCGGACGGUGAguuggUCUACGaCGGCaCCg -3'
miRNA:   3'- uaUGGUCUGUCACU-----GGGUGC-GUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 26531 0.72 0.3081
Target:  5'- cUACCGGGCGGUGuuccuggcgaucACCCugGCugguugcgccGCCCu -3'
miRNA:   3'- uAUGGUCUGUCAC------------UGGGugCGu---------CGGG- -5'
18767 5' -56.6 NC_004683.1 + 44027 0.71 0.339703
Target:  5'- cUGCCAGaACAGUuugacgauGCCCugGUAGCCg -3'
miRNA:   3'- uAUGGUC-UGUCAc-------UGGGugCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 32039 0.71 0.356363
Target:  5'- aAUGCCAGucgcuaAUGGUGGauuaCCGCGCuGCCCu -3'
miRNA:   3'- -UAUGGUC------UGUCACUg---GGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 37816 0.71 0.364906
Target:  5'- -cACCAGAgGGUGACCCccuGCGCgAGUg- -3'
miRNA:   3'- uaUGGUCUgUCACUGGG---UGCG-UCGgg -5'
18767 5' -56.6 NC_004683.1 + 46469 0.7 0.409699
Target:  5'- cGUACUGGGCgcGGUagcGGcCCCACGgGGCCCg -3'
miRNA:   3'- -UAUGGUCUG--UCA---CU-GGGUGCgUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 56829 0.69 0.416238
Target:  5'- -gGCCGGAaggcgcgccauguuCAGUGGCCCAC-CGGUCg -3'
miRNA:   3'- uaUGGUCU--------------GUCACUGGGUGcGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 3711 0.69 0.447903
Target:  5'- gAUGCCggcgaGGACGGUGAgCCaaACGaCGGCCUc -3'
miRNA:   3'- -UAUGG-----UCUGUCACUgGG--UGC-GUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 22005 0.69 0.45776
Target:  5'- -cGCCGGGCGGauUGccgggauuGCCCGacgcaccaGCAGCCCg -3'
miRNA:   3'- uaUGGUCUGUC--AC--------UGGGUg-------CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 34024 0.69 0.45776
Target:  5'- gGUGCCGGcCGauccaGCCgACGCGGCCCg -3'
miRNA:   3'- -UAUGGUCuGUcac--UGGgUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 12728 0.69 0.45776
Target:  5'- -cGCC-GACAGcgGGCCCAgcaGCGGCgCCg -3'
miRNA:   3'- uaUGGuCUGUCa-CUGGGUg--CGUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 13077 0.68 0.477813
Target:  5'- -cGCCcGGCAGgaagccgcGCUCGCGCAGCCa -3'
miRNA:   3'- uaUGGuCUGUCac------UGGGUGCGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.