miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 5' -56.6 NC_004683.1 + 44916 0.66 0.594449
Target:  5'- -gGCCGGACgguucaccAGUGGCCaGCGCcuGCCg -3'
miRNA:   3'- uaUGGUCUG--------UCACUGGgUGCGu-CGGg -5'
18767 5' -56.6 NC_004683.1 + 11800 0.67 0.551055
Target:  5'- -gAUCGGACGGUucCUCACGCAggGCCUu -3'
miRNA:   3'- uaUGGUCUGUCAcuGGGUGCGU--CGGG- -5'
18767 5' -56.6 NC_004683.1 + 13794 0.67 0.551055
Target:  5'- --cCCAGuCAGccgGGCCaGCaGCAGCCCg -3'
miRNA:   3'- uauGGUCuGUCa--CUGGgUG-CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 49581 0.67 0.572655
Target:  5'- -cACCAGuaGCAGUGGCCgCAuccuCGuCGGCCa -3'
miRNA:   3'- uaUGGUC--UGUCACUGG-GU----GC-GUCGGg -5'
18767 5' -56.6 NC_004683.1 + 20038 0.67 0.572655
Target:  5'- -gGCCAGAcCGGUGAUaCgGCGCGGUUg -3'
miRNA:   3'- uaUGGUCU-GUCACUG-GgUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 48333 0.67 0.577001
Target:  5'- -aACCAGA-AGUGGgccgacguccgcaucCCCGCGCuGCUCg -3'
miRNA:   3'- uaUGGUCUgUCACU---------------GGGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 17865 0.67 0.583532
Target:  5'- -aACCGGGCGGgccgggGACgC-CGCAGCgCg -3'
miRNA:   3'- uaUGGUCUGUCa-----CUGgGuGCGUCGgG- -5'
18767 5' -56.6 NC_004683.1 + 56345 0.67 0.583532
Target:  5'- cGUGCUcGACGGgcugcucACCCACGaCAGCaCCa -3'
miRNA:   3'- -UAUGGuCUGUCac-----UGGGUGC-GUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 28761 0.66 0.594449
Target:  5'- uGUGCCAacggcuCAGUGAa--GCGCAGUCCa -3'
miRNA:   3'- -UAUGGUcu----GUCACUgggUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 40319 0.67 0.540347
Target:  5'- -cGCCGcGGCGGUGACCCGaugaGCGaguaucucgacGCCUc -3'
miRNA:   3'- uaUGGU-CUGUCACUGGGUg---CGU-----------CGGG- -5'
18767 5' -56.6 NC_004683.1 + 24087 0.68 0.49829
Target:  5'- -gGCCaaGGGC--UGGCCCGCGCuGCUCg -3'
miRNA:   3'- uaUGG--UCUGucACUGGGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 3711 0.69 0.447903
Target:  5'- gAUGCCggcgaGGACGGUGAgCCaaACGaCGGCCUc -3'
miRNA:   3'- -UAUGG-----UCUGUCACUgGG--UGC-GUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 21975 0.76 0.173305
Target:  5'- -gGCCAGGCGGguggugcUGGCgCGCGCGGCCa -3'
miRNA:   3'- uaUGGUCUGUC-------ACUGgGUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 426 0.75 0.204165
Target:  5'- -gGCgCAGGCGGUGGCUgGCGCGGCg- -3'
miRNA:   3'- uaUG-GUCUGUCACUGGgUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 17908 0.74 0.232913
Target:  5'- -cACaCAGcGCAGUGGCCCACcCGGCCa -3'
miRNA:   3'- uaUG-GUC-UGUCACUGGGUGcGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 8374 0.73 0.258301
Target:  5'- --uCCuGACGGUGAucggcCCCGCGCGGgCCg -3'
miRNA:   3'- uauGGuCUGUCACU-----GGGUGCGUCgGG- -5'
18767 5' -56.6 NC_004683.1 + 7347 0.72 0.278793
Target:  5'- -aGCCGGACGGUGAguuggUCUACGaCGGCaCCg -3'
miRNA:   3'- uaUGGUCUGUCACU-----GGGUGC-GUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 26531 0.72 0.3081
Target:  5'- cUACCGGGCGGUGuuccuggcgaucACCCugGCugguugcgccGCCCu -3'
miRNA:   3'- uAUGGUCUGUCAC------------UGGGugCGu---------CGGG- -5'
18767 5' -56.6 NC_004683.1 + 32039 0.71 0.356363
Target:  5'- aAUGCCAGucgcuaAUGGUGGauuaCCGCGCuGCCCu -3'
miRNA:   3'- -UAUGGUC------UGUCACUg---GGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 56829 0.69 0.416238
Target:  5'- -gGCCGGAaggcgcgccauguuCAGUGGCCCAC-CGGUCg -3'
miRNA:   3'- uaUGGUCU--------------GUCACUGGGUGcGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.