Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18767 | 5' | -56.6 | NC_004683.1 | + | 26531 | 0.72 | 0.3081 |
Target: 5'- cUACCGGGCGGUGuuccuggcgaucACCCugGCugguugcgccGCCCu -3' miRNA: 3'- uAUGGUCUGUCAC------------UGGGugCGu---------CGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 32039 | 0.71 | 0.356363 |
Target: 5'- aAUGCCAGucgcuaAUGGUGGauuaCCGCGCuGCCCu -3' miRNA: 3'- -UAUGGUC------UGUCACUg---GGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 56829 | 0.69 | 0.416238 |
Target: 5'- -gGCCGGAaggcgcgccauguuCAGUGGCCCAC-CGGUCg -3' miRNA: 3'- uaUGGUCU--------------GUCACUGGGUGcGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 3711 | 0.69 | 0.447903 |
Target: 5'- gAUGCCggcgaGGACGGUGAgCCaaACGaCGGCCUc -3' miRNA: 3'- -UAUGG-----UCUGUCACUgGG--UGC-GUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 24087 | 0.68 | 0.49829 |
Target: 5'- -gGCCaaGGGC--UGGCCCGCGCuGCUCg -3' miRNA: 3'- uaUGG--UCUGucACUGGGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 40319 | 0.67 | 0.540347 |
Target: 5'- -cGCCGcGGCGGUGACCCGaugaGCGaguaucucgacGCCUc -3' miRNA: 3'- uaUGGU-CUGUCACUGGGUg---CGU-----------CGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 34024 | 0.69 | 0.45776 |
Target: 5'- gGUGCCGGcCGauccaGCCgACGCGGCCCg -3' miRNA: 3'- -UAUGGUCuGUcac--UGGgUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 13077 | 0.68 | 0.477813 |
Target: 5'- -cGCCcGGCAGgaagccgcGCUCGCGCAGCCa -3' miRNA: 3'- uaUGGuCUGUCac------UGGGUGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 20591 | 0.68 | 0.477813 |
Target: 5'- cGUGCCGGAuUGGUuACCCGCcCGGCCUc -3' miRNA: 3'- -UAUGGUCU-GUCAcUGGGUGcGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 40517 | 0.68 | 0.49829 |
Target: 5'- cAUGCCacGGGCGGguGCCCACacuGCGGCUCg -3' miRNA: 3'- -UAUGG--UCUGUCacUGGGUG---CGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 46885 | 0.68 | 0.49829 |
Target: 5'- -aACCGGGCGGUgcuugGACCCGcCGCcGCgCa -3' miRNA: 3'- uaUGGUCUGUCA-----CUGGGU-GCGuCGgG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 43923 | 0.68 | 0.508675 |
Target: 5'- -cACCGGGCucgaGACCgaGCGCGGCCg -3' miRNA: 3'- uaUGGUCUGuca-CUGGg-UGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 12728 | 0.69 | 0.45776 |
Target: 5'- -cGCC-GACAGcgGGCCCAgcaGCGGCgCCg -3' miRNA: 3'- uaUGGuCUGUCa-CUGGGUg--CGUCG-GG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 22005 | 0.69 | 0.45776 |
Target: 5'- -cGCCGGGCGGauUGccgggauuGCCCGacgcaccaGCAGCCCg -3' miRNA: 3'- uaUGGUCUGUC--AC--------UGGGUg-------CGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 46469 | 0.7 | 0.409699 |
Target: 5'- cGUACUGGGCgcGGUagcGGcCCCACGgGGCCCg -3' miRNA: 3'- -UAUGGUCUG--UCA---CU-GGGUGCgUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 37816 | 0.71 | 0.364906 |
Target: 5'- -cACCAGAgGGUGACCCccuGCGCgAGUg- -3' miRNA: 3'- uaUGGUCUgUCACUGGG---UGCG-UCGgg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 44027 | 0.71 | 0.339703 |
Target: 5'- cUGCCAGaACAGUuugacgauGCCCugGUAGCCg -3' miRNA: 3'- uAUGGUC-UGUCAc-------UGGGugCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 55971 | 0.73 | 0.264991 |
Target: 5'- -gGCCuugaauACGGUGGCgaCGCGCGGCCCg -3' miRNA: 3'- uaUGGuc----UGUCACUGg-GUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 29966 | 0.74 | 0.221025 |
Target: 5'- -cACCGuGACGGUGAUCCAgucgcCGUAGCCUu -3' miRNA: 3'- uaUGGU-CUGUCACUGGGU-----GCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 41060 | 0.66 | 0.64933 |
Target: 5'- gGUAgCAG-CGGcGAUgCGCGCGGCCa -3' miRNA: 3'- -UAUgGUCuGUCaCUGgGUGCGUCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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