miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 5' -56.6 NC_004683.1 + 46936 0.67 0.551055
Target:  5'- -cACCAGGCcguGGUGuguGCCCgACGCGGUgaCCg -3'
miRNA:   3'- uaUGGUCUG---UCAC---UGGG-UGCGUCG--GG- -5'
18767 5' -56.6 NC_004683.1 + 4741 0.67 0.551055
Target:  5'- -gGCCAGAUc--GGgCCACGCuuGCCCa -3'
miRNA:   3'- uaUGGUCUGucaCUgGGUGCGu-CGGG- -5'
18767 5' -56.6 NC_004683.1 + 21755 0.67 0.551055
Target:  5'- --cCCGGugA-UGAUgCGCGCAGUCCa -3'
miRNA:   3'- uauGGUCugUcACUGgGUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 40319 0.67 0.540347
Target:  5'- -cGCCGcGGCGGUGACCCGaugaGCGaguaucucgacGCCUc -3'
miRNA:   3'- uaUGGU-CUGUCACUGGGUg---CGU-----------CGGG- -5'
18767 5' -56.6 NC_004683.1 + 11800 0.67 0.551055
Target:  5'- -gAUCGGACGGUucCUCACGCAggGCCUu -3'
miRNA:   3'- uaUGGUCUGUCAcuGGGUGCGU--CGGG- -5'
18767 5' -56.6 NC_004683.1 + 13794 0.67 0.551055
Target:  5'- --cCCAGuCAGccgGGCCaGCaGCAGCCCg -3'
miRNA:   3'- uauGGUCuGUCa--CUGGgUG-CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 49581 0.67 0.572655
Target:  5'- -cACCAGuaGCAGUGGCCgCAuccuCGuCGGCCa -3'
miRNA:   3'- uaUGGUC--UGUCACUGG-GU----GC-GUCGGg -5'
18767 5' -56.6 NC_004683.1 + 48333 0.67 0.577001
Target:  5'- -aACCAGA-AGUGGgccgacguccgcaucCCCGCGCuGCUCg -3'
miRNA:   3'- uaUGGUCUgUCACU---------------GGGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 17865 0.67 0.583532
Target:  5'- -aACCGGGCGGgccgggGACgC-CGCAGCgCg -3'
miRNA:   3'- uaUGGUCUGUCa-----CUGgGuGCGUCGgG- -5'
18767 5' -56.6 NC_004683.1 + 43923 0.68 0.508675
Target:  5'- -cACCGGGCucgaGACCgaGCGCGGCCg -3'
miRNA:   3'- uaUGGUCUGuca-CUGGg-UGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 46885 0.68 0.49829
Target:  5'- -aACCGGGCGGUgcuugGACCCGcCGCcGCgCa -3'
miRNA:   3'- uaUGGUCUGUCA-----CUGGGU-GCGuCGgG- -5'
18767 5' -56.6 NC_004683.1 + 40517 0.68 0.49829
Target:  5'- cAUGCCacGGGCGGguGCCCACacuGCGGCUCg -3'
miRNA:   3'- -UAUGG--UCUGUCacUGGGUG---CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 20591 0.68 0.477813
Target:  5'- cGUGCCGGAuUGGUuACCCGCcCGGCCUc -3'
miRNA:   3'- -UAUGGUCU-GUCAcUGGGUGcGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 13077 0.68 0.477813
Target:  5'- -cGCCcGGCAGgaagccgcGCUCGCGCAGCCa -3'
miRNA:   3'- uaUGGuCUGUCac------UGGGUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 12121 0.68 0.52971
Target:  5'- -gGCCAGccuccgGCGGUaGcCCCGCGCgggcgcgcuGGCCCg -3'
miRNA:   3'- uaUGGUC------UGUCA-CuGGGUGCG---------UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 24087 0.68 0.49829
Target:  5'- -gGCCaaGGGC--UGGCCCGCGCuGCUCg -3'
miRNA:   3'- uaUGG--UCUGucACUGGGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 5918 0.68 0.52971
Target:  5'- -cGCCuuGGCGGcgGugCCGCGCGGCg- -3'
miRNA:   3'- uaUGGu-CUGUCa-CugGGUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 34024 0.69 0.45776
Target:  5'- gGUGCCGGcCGauccaGCCgACGCGGCCCg -3'
miRNA:   3'- -UAUGGUCuGUcac--UGGgUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 56829 0.69 0.416238
Target:  5'- -gGCCGGAaggcgcgccauguuCAGUGGCCCAC-CGGUCg -3'
miRNA:   3'- uaUGGUCU--------------GUCACUGGGUGcGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 3711 0.69 0.447903
Target:  5'- gAUGCCggcgaGGACGGUGAgCCaaACGaCGGCCUc -3'
miRNA:   3'- -UAUGG-----UCUGUCACUgGG--UGC-GUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.