Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18767 | 5' | -56.6 | NC_004683.1 | + | 21755 | 0.67 | 0.551055 |
Target: 5'- --cCCGGugA-UGAUgCGCGCAGUCCa -3' miRNA: 3'- uauGGUCugUcACUGgGUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 21975 | 0.76 | 0.173305 |
Target: 5'- -gGCCAGGCGGguggugcUGGCgCGCGCGGCCa -3' miRNA: 3'- uaUGGUCUGUC-------ACUGgGUGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 22005 | 0.69 | 0.45776 |
Target: 5'- -cGCCGGGCGGauUGccgggauuGCCCGacgcaccaGCAGCCCg -3' miRNA: 3'- uaUGGUCUGUC--AC--------UGGGUg-------CGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 24087 | 0.68 | 0.49829 |
Target: 5'- -gGCCaaGGGC--UGGCCCGCGCuGCUCg -3' miRNA: 3'- uaUGG--UCUGucACUGGGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 26531 | 0.72 | 0.3081 |
Target: 5'- cUACCGGGCGGUGuuccuggcgaucACCCugGCugguugcgccGCCCu -3' miRNA: 3'- uAUGGUCUGUCAC------------UGGGugCGu---------CGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 28761 | 0.66 | 0.594449 |
Target: 5'- uGUGCCAacggcuCAGUGAa--GCGCAGUCCa -3' miRNA: 3'- -UAUGGUcu----GUCACUgggUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 29966 | 0.74 | 0.221025 |
Target: 5'- -cACCGuGACGGUGAUCCAgucgcCGUAGCCUu -3' miRNA: 3'- uaUGGU-CUGUCACUGGGU-----GCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 32039 | 0.71 | 0.356363 |
Target: 5'- aAUGCCAGucgcuaAUGGUGGauuaCCGCGCuGCCCu -3' miRNA: 3'- -UAUGGUC------UGUCACUg---GGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 32049 | 0.67 | 0.540347 |
Target: 5'- gGUACCccgauccuGACGG-GGCCCcgACGCAGCgCu -3' miRNA: 3'- -UAUGGu-------CUGUCaCUGGG--UGCGUCGgG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 32697 | 0.66 | 0.638346 |
Target: 5'- --gUCuGGCAGUGgcaGCUCGCGCcggcuGGCCCg -3' miRNA: 3'- uauGGuCUGUCAC---UGGGUGCG-----UCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 34024 | 0.69 | 0.45776 |
Target: 5'- gGUGCCGGcCGauccaGCCgACGCGGCCCg -3' miRNA: 3'- -UAUGGUCuGUcac--UGGgUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 37696 | 0.66 | 0.61637 |
Target: 5'- gGUGUCAG-CAGUGGCgacaaCCGCGCGcuGCCCc -3' miRNA: 3'- -UAUGGUCuGUCACUG-----GGUGCGU--CGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 37816 | 0.71 | 0.364906 |
Target: 5'- -cACCAGAgGGUGACCCccuGCGCgAGUg- -3' miRNA: 3'- uaUGGUCUgUCACUGGG---UGCG-UCGgg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 40319 | 0.67 | 0.540347 |
Target: 5'- -cGCCGcGGCGGUGACCCGaugaGCGaguaucucgacGCCUc -3' miRNA: 3'- uaUGGU-CUGUCACUGGGUg---CGU-----------CGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 40517 | 0.68 | 0.49829 |
Target: 5'- cAUGCCacGGGCGGguGCCCACacuGCGGCUCg -3' miRNA: 3'- -UAUGG--UCUGUCacUGGGUG---CGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 41019 | 0.66 | 0.64933 |
Target: 5'- -gACCccaaGGGCAGUGACCUcgGCGCcuaccucGCCg -3' miRNA: 3'- uaUGG----UCUGUCACUGGG--UGCGu------CGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 41060 | 0.66 | 0.64933 |
Target: 5'- gGUAgCAG-CGGcGAUgCGCGCGGCCa -3' miRNA: 3'- -UAUgGUCuGUCaCUGgGUGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 43923 | 0.68 | 0.508675 |
Target: 5'- -cACCGGGCucgaGACCgaGCGCGGCCg -3' miRNA: 3'- uaUGGUCUGuca-CUGGg-UGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 44027 | 0.71 | 0.339703 |
Target: 5'- cUGCCAGaACAGUuugacgauGCCCugGUAGCCg -3' miRNA: 3'- uAUGGUC-UGUCAc-------UGGGugCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 44885 | 0.66 | 0.605398 |
Target: 5'- -gGCCAGGCGcaacuugaacGcGAUCgcgggCACGCGGCCCg -3' miRNA: 3'- uaUGGUCUGU----------CaCUGG-----GUGCGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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