miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 5' -56.6 NC_004683.1 + 426 0.75 0.204165
Target:  5'- -gGCgCAGGCGGUGGCUgGCGCGGCg- -3'
miRNA:   3'- uaUG-GUCUGUCACUGGgUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 3711 0.69 0.447903
Target:  5'- gAUGCCggcgaGGACGGUGAgCCaaACGaCGGCCUc -3'
miRNA:   3'- -UAUGG-----UCUGUCACUgGG--UGC-GUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 4741 0.67 0.551055
Target:  5'- -gGCCAGAUc--GGgCCACGCuuGCCCa -3'
miRNA:   3'- uaUGGUCUGucaCUgGGUGCGu-CGGG- -5'
18767 5' -56.6 NC_004683.1 + 5197 0.66 0.61637
Target:  5'- -gGCC-GACAGc-GCCCgggcACGCAGCUCg -3'
miRNA:   3'- uaUGGuCUGUCacUGGG----UGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 5918 0.68 0.52971
Target:  5'- -cGCCuuGGCGGcgGugCCGCGCGGCg- -3'
miRNA:   3'- uaUGGu-CUGUCa-CugGGUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 7347 0.72 0.278793
Target:  5'- -aGCCGGACGGUGAguuggUCUACGaCGGCaCCg -3'
miRNA:   3'- uaUGGUCUGUCACU-----GGGUGC-GUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 8374 0.73 0.258301
Target:  5'- --uCCuGACGGUGAucggcCCCGCGCGGgCCg -3'
miRNA:   3'- uauGGuCUGUCACU-----GGGUGCGUCgGG- -5'
18767 5' -56.6 NC_004683.1 + 8469 0.66 0.605398
Target:  5'- -gGCUGGAUcGcGGCCCGCGCggGGCCg -3'
miRNA:   3'- uaUGGUCUGuCaCUGGGUGCG--UCGGg -5'
18767 5' -56.6 NC_004683.1 + 10792 1.1 0.000531
Target:  5'- gAUACCAGACAGUGACCCACGCAGCCCg -3'
miRNA:   3'- -UAUGGUCUGUCACUGGGUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 11800 0.67 0.551055
Target:  5'- -gAUCGGACGGUucCUCACGCAggGCCUu -3'
miRNA:   3'- uaUGGUCUGUCAcuGGGUGCGU--CGGG- -5'
18767 5' -56.6 NC_004683.1 + 12121 0.68 0.52971
Target:  5'- -gGCCAGccuccgGCGGUaGcCCCGCGCgggcgcgcuGGCCCg -3'
miRNA:   3'- uaUGGUC------UGUCA-CuGGGUGCG---------UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 12728 0.69 0.45776
Target:  5'- -cGCC-GACAGcgGGCCCAgcaGCGGCgCCg -3'
miRNA:   3'- uaUGGuCUGUCa-CUGGGUg--CGUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 13077 0.68 0.477813
Target:  5'- -cGCCcGGCAGgaagccgcGCUCGCGCAGCCa -3'
miRNA:   3'- uaUGGuCUGUCac------UGGGUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 13398 0.77 0.132024
Target:  5'- -gGCCAG--GGUGGCCCGCagGCGGCCCc -3'
miRNA:   3'- uaUGGUCugUCACUGGGUG--CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 13794 0.67 0.551055
Target:  5'- --cCCAGuCAGccgGGCCaGCaGCAGCCCg -3'
miRNA:   3'- uauGGUCuGUCa--CUGGgUG-CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 17865 0.67 0.583532
Target:  5'- -aACCGGGCGGgccgggGACgC-CGCAGCgCg -3'
miRNA:   3'- uaUGGUCUGUCa-----CUGgGuGCGUCGgG- -5'
18767 5' -56.6 NC_004683.1 + 17908 0.74 0.232913
Target:  5'- -cACaCAGcGCAGUGGCCCACcCGGCCa -3'
miRNA:   3'- uaUG-GUC-UGUCACUGGGUGcGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 20038 0.67 0.572655
Target:  5'- -gGCCAGAcCGGUGAUaCgGCGCGGUUg -3'
miRNA:   3'- uaUGGUCU-GUCACUG-GgUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 20526 0.66 0.594449
Target:  5'- -cGCCGGccaucggcGCGGUGGCCCcUGCAccGCCg -3'
miRNA:   3'- uaUGGUC--------UGUCACUGGGuGCGU--CGGg -5'
18767 5' -56.6 NC_004683.1 + 20591 0.68 0.477813
Target:  5'- cGUGCCGGAuUGGUuACCCGCcCGGCCUc -3'
miRNA:   3'- -UAUGGUCU-GUCAcUGGGUGcGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.