Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18767 | 5' | -56.6 | NC_004683.1 | + | 56829 | 0.69 | 0.416238 |
Target: 5'- -gGCCGGAaggcgcgccauguuCAGUGGCCCAC-CGGUCg -3' miRNA: 3'- uaUGGUCU--------------GUCACUGGGUGcGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 56345 | 0.67 | 0.583532 |
Target: 5'- cGUGCUcGACGGgcugcucACCCACGaCAGCaCCa -3' miRNA: 3'- -UAUGGuCUGUCac-----UGGGUGC-GUCG-GG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 56257 | 0.66 | 0.638346 |
Target: 5'- gAUGCgGGugggcGCGGUGGCCaGCGCGGCg- -3' miRNA: 3'- -UAUGgUC-----UGUCACUGGgUGCGUCGgg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 55971 | 0.73 | 0.264991 |
Target: 5'- -gGCCuugaauACGGUGGCgaCGCGCGGCCCg -3' miRNA: 3'- uaUGGuc----UGUCACUGg-GUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 52698 | 0.66 | 0.627356 |
Target: 5'- aGUGCCGGguACAGcUGuacGCCaagCGCGguGCCCg -3' miRNA: 3'- -UAUGGUC--UGUC-AC---UGG---GUGCguCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 52300 | 0.66 | 0.638346 |
Target: 5'- -cGCCgAGGCGGacccGACCgACGaCGGCCUc -3' miRNA: 3'- uaUGG-UCUGUCa---CUGGgUGC-GUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 51217 | 0.66 | 0.638346 |
Target: 5'- -gGCCGucCAGUcGGCCU-UGCGGCCCu -3' miRNA: 3'- uaUGGUcuGUCA-CUGGGuGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 50458 | 0.67 | 0.561827 |
Target: 5'- gGUGCCAGccacagucgggGCAGcGGCCCAuCGCgaucAGCUCg -3' miRNA: 3'- -UAUGGUC-----------UGUCaCUGGGU-GCG----UCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 49581 | 0.67 | 0.572655 |
Target: 5'- -cACCAGuaGCAGUGGCCgCAuccuCGuCGGCCa -3' miRNA: 3'- uaUGGUC--UGUCACUGG-GU----GC-GUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 48986 | 0.66 | 0.627356 |
Target: 5'- aGUACCgcGGGCccgccGcGAUCCACGCcGCCCu -3' miRNA: 3'- -UAUGG--UCUGu----CaCUGGGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 48333 | 0.67 | 0.577001 |
Target: 5'- -aACCAGA-AGUGGgccgacguccgcaucCCCGCGCuGCUCg -3' miRNA: 3'- uaUGGUCUgUCACU---------------GGGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 47277 | 0.66 | 0.64933 |
Target: 5'- -gGCCGGugGgGUGA-CCGCGUugccGGCCUg -3' miRNA: 3'- uaUGGUCugU-CACUgGGUGCG----UCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 46936 | 0.67 | 0.551055 |
Target: 5'- -cACCAGGCcguGGUGuguGCCCgACGCGGUgaCCg -3' miRNA: 3'- uaUGGUCUG---UCAC---UGGG-UGCGUCG--GG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 46885 | 0.68 | 0.49829 |
Target: 5'- -aACCGGGCGGUgcuugGACCCGcCGCcGCgCa -3' miRNA: 3'- uaUGGUCUGUCA-----CUGGGU-GCGuCGgG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 46469 | 0.7 | 0.409699 |
Target: 5'- cGUACUGGGCgcGGUagcGGcCCCACGgGGCCCg -3' miRNA: 3'- -UAUGGUCUG--UCA---CU-GGGUGCgUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 44916 | 0.66 | 0.594449 |
Target: 5'- -gGCCGGACgguucaccAGUGGCCaGCGCcuGCCg -3' miRNA: 3'- uaUGGUCUG--------UCACUGGgUGCGu-CGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 44885 | 0.66 | 0.605398 |
Target: 5'- -gGCCAGGCGcaacuugaacGcGAUCgcgggCACGCGGCCCg -3' miRNA: 3'- uaUGGUCUGU----------CaCUGG-----GUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 44027 | 0.71 | 0.339703 |
Target: 5'- cUGCCAGaACAGUuugacgauGCCCugGUAGCCg -3' miRNA: 3'- uAUGGUC-UGUCAc-------UGGGugCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 43923 | 0.68 | 0.508675 |
Target: 5'- -cACCGGGCucgaGACCgaGCGCGGCCg -3' miRNA: 3'- uaUGGUCUGuca-CUGGg-UGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 41060 | 0.66 | 0.64933 |
Target: 5'- gGUAgCAG-CGGcGAUgCGCGCGGCCa -3' miRNA: 3'- -UAUgGUCuGUCaCUGgGUGCGUCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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