miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 5' -56.6 NC_004683.1 + 10792 1.1 0.000531
Target:  5'- gAUACCAGACAGUGACCCACGCAGCCCg -3'
miRNA:   3'- -UAUGGUCUGUCACUGGGUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 46936 0.67 0.551055
Target:  5'- -cACCAGGCcguGGUGuguGCCCgACGCGGUgaCCg -3'
miRNA:   3'- uaUGGUCUG---UCAC---UGGG-UGCGUCG--GG- -5'
18767 5' -56.6 NC_004683.1 + 21755 0.67 0.551055
Target:  5'- --cCCGGugA-UGAUgCGCGCAGUCCa -3'
miRNA:   3'- uauGGUCugUcACUGgGUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 41060 0.66 0.64933
Target:  5'- gGUAgCAG-CGGcGAUgCGCGCGGCCa -3'
miRNA:   3'- -UAUgGUCuGUCaCUGgGUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 37816 0.71 0.364906
Target:  5'- -cACCAGAgGGUGACCCccuGCGCgAGUg- -3'
miRNA:   3'- uaUGGUCUgUCACUGGG---UGCG-UCGgg -5'
18767 5' -56.6 NC_004683.1 + 46469 0.7 0.409699
Target:  5'- cGUACUGGGCgcGGUagcGGcCCCACGgGGCCCg -3'
miRNA:   3'- -UAUGGUCUG--UCA---CU-GGGUGCgUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 12728 0.69 0.45776
Target:  5'- -cGCC-GACAGcgGGCCCAgcaGCGGCgCCg -3'
miRNA:   3'- uaUGGuCUGUCa-CUGGGUg--CGUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 34024 0.69 0.45776
Target:  5'- gGUGCCGGcCGauccaGCCgACGCGGCCCg -3'
miRNA:   3'- -UAUGGUCuGUcac--UGGgUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 40517 0.68 0.49829
Target:  5'- cAUGCCacGGGCGGguGCCCACacuGCGGCUCg -3'
miRNA:   3'- -UAUGG--UCUGUCacUGGGUG---CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 32049 0.67 0.540347
Target:  5'- gGUACCccgauccuGACGG-GGCCCcgACGCAGCgCu -3'
miRNA:   3'- -UAUGGu-------CUGUCaCUGGG--UGCGUCGgG- -5'
18767 5' -56.6 NC_004683.1 + 43923 0.68 0.508675
Target:  5'- -cACCGGGCucgaGACCgaGCGCGGCCg -3'
miRNA:   3'- uaUGGUCUGuca-CUGGg-UGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 20591 0.68 0.477813
Target:  5'- cGUGCCGGAuUGGUuACCCGCcCGGCCUc -3'
miRNA:   3'- -UAUGGUCU-GUCAcUGGGUGcGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 29966 0.74 0.221025
Target:  5'- -cACCGuGACGGUGAUCCAgucgcCGUAGCCUu -3'
miRNA:   3'- uaUGGU-CUGUCACUGGGU-----GCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 12121 0.68 0.52971
Target:  5'- -gGCCAGccuccgGCGGUaGcCCCGCGCgggcgcgcuGGCCCg -3'
miRNA:   3'- uaUGGUC------UGUCA-CuGGGUGCG---------UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 55971 0.73 0.264991
Target:  5'- -gGCCuugaauACGGUGGCgaCGCGCGGCCCg -3'
miRNA:   3'- uaUGGuc----UGUCACUGg-GUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 13077 0.68 0.477813
Target:  5'- -cGCCcGGCAGgaagccgcGCUCGCGCAGCCa -3'
miRNA:   3'- uaUGGuCUGUCac------UGGGUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 5918 0.68 0.52971
Target:  5'- -cGCCuuGGCGGcgGugCCGCGCGGCg- -3'
miRNA:   3'- uaUGGu-CUGUCa-CugGGUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 4741 0.67 0.551055
Target:  5'- -gGCCAGAUc--GGgCCACGCuuGCCCa -3'
miRNA:   3'- uaUGGUCUGucaCUgGGUGCGu-CGGG- -5'
18767 5' -56.6 NC_004683.1 + 44027 0.71 0.339703
Target:  5'- cUGCCAGaACAGUuugacgauGCCCugGUAGCCg -3'
miRNA:   3'- uAUGGUC-UGUCAc-------UGGGugCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 22005 0.69 0.45776
Target:  5'- -cGCCGGGCGGauUGccgggauuGCCCGacgcaccaGCAGCCCg -3'
miRNA:   3'- uaUGGUCUGUC--AC--------UGGGUg-------CGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.