miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18773 5' -65.2 NC_004683.1 + 13197 1.11 0.000093
Target:  5'- cCGCCGAUGCCCCUCCGGGCAGCCGCCg -3'
miRNA:   3'- -GCGGCUACGGGGAGGCCCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 20497 0.8 0.025672
Target:  5'- cCGCCGGUGCCgCCguuggccgccCCGGGUGcGCCGCCa -3'
miRNA:   3'- -GCGGCUACGG-GGa---------GGCCCGU-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 8261 0.78 0.033788
Target:  5'- uCGCCGAUGCCCCUgCUuGGCcGCgGCCu -3'
miRNA:   3'- -GCGGCUACGGGGA-GGcCCGuCGgCGG- -5'
18773 5' -65.2 NC_004683.1 + 16972 0.76 0.052286
Target:  5'- gGCUGGUGCCCCUcgguuuaaccaCCGGGgGGCaccaGCCc -3'
miRNA:   3'- gCGGCUACGGGGA-----------GGCCCgUCGg---CGG- -5'
18773 5' -65.2 NC_004683.1 + 24676 0.75 0.066696
Target:  5'- uGCCGGgucGCCUCccaugaggCCGaGGUAGCCGCCg -3'
miRNA:   3'- gCGGCUa--CGGGGa-------GGC-CCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 26419 0.74 0.070384
Target:  5'- cCGCUGGUGCCCg-CCGGu--GCCGCCg -3'
miRNA:   3'- -GCGGCUACGGGgaGGCCcguCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 13018 0.74 0.076081
Target:  5'- gCGCCGGUgGCCCCggcgacuUCCGGGUGGgauucaaCGCCa -3'
miRNA:   3'- -GCGGCUA-CGGGG-------AGGCCCGUCg------GCGG- -5'
18773 5' -65.2 NC_004683.1 + 27947 0.73 0.087189
Target:  5'- gGCCccUGCCUCgCCGGGCGG-CGCCa -3'
miRNA:   3'- gCGGcuACGGGGaGGCCCGUCgGCGG- -5'
18773 5' -65.2 NC_004683.1 + 50463 0.72 0.096963
Target:  5'- aCGCgGGUGCCagCCacagUCgGGGCAGCgGCCc -3'
miRNA:   3'- -GCGgCUACGG--GG----AGgCCCGUCGgCGG- -5'
18773 5' -65.2 NC_004683.1 + 7456 0.71 0.113584
Target:  5'- gGUCGA-GCgCCUCCGGGUgcucgguGCCGUCg -3'
miRNA:   3'- gCGGCUaCGgGGAGGCCCGu------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 18386 0.71 0.116601
Target:  5'- uGCCGAUGCgCCCgucUCCGGGCccgaCUGCa -3'
miRNA:   3'- gCGGCUACG-GGG---AGGCCCGuc--GGCGg -5'
18773 5' -65.2 NC_004683.1 + 1744 0.71 0.116601
Target:  5'- uCGUCGAgGCCCCaaCCGcaCGGCCGCCa -3'
miRNA:   3'- -GCGGCUaCGGGGa-GGCccGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 18246 0.71 0.119693
Target:  5'- aGCCGGUGaCCgugacggcggCUUCgGGGUccGGCCGCCa -3'
miRNA:   3'- gCGGCUAC-GG----------GGAGgCCCG--UCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 12868 0.71 0.126107
Target:  5'- cCGCCaGcgGCguauCCCgCCGGGUAGCCGUa -3'
miRNA:   3'- -GCGG-CuaCG----GGGaGGCCCGUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 41923 0.71 0.126107
Target:  5'- gCGCCGcuUGCUCaUUCGGGCA-CCGCCu -3'
miRNA:   3'- -GCGGCu-ACGGGgAGGCCCGUcGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 21912 0.7 0.135974
Target:  5'- uGCUGGUGCgucgggcaauCCCggcaaUCCgcccggcgguggcGGGCGGCCGCCg -3'
miRNA:   3'- gCGGCUACG----------GGG-----AGG-------------CCCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 8632 0.7 0.139899
Target:  5'- uCGCUGGUcGCCgCUCgcccaggaUGGGCAGCUGCg -3'
miRNA:   3'- -GCGGCUA-CGGgGAG--------GCCCGUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 23806 0.7 0.143557
Target:  5'- gCGCCGGgguggUGCCgCCgCCGGuGCcGCCGCg -3'
miRNA:   3'- -GCGGCU-----ACGG-GGaGGCC-CGuCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 8184 0.69 0.159078
Target:  5'- uGUCGGUGCCagCCUCgGGGUcgucggcGCCGUCg -3'
miRNA:   3'- gCGGCUACGG--GGAGgCCCGu------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 38510 0.69 0.159078
Target:  5'- aCGCCGAcGCCUUg--GGGguGCCGCa -3'
miRNA:   3'- -GCGGCUaCGGGGaggCCCguCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.