miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18773 5' -65.2 NC_004683.1 + 1744 0.71 0.116601
Target:  5'- uCGUCGAgGCCCCaaCCGcaCGGCCGCCa -3'
miRNA:   3'- -GCGGCUaCGGGGa-GGCccGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 2373 0.69 0.167394
Target:  5'- uCGUCGAUGCUCaUgCGGGguGCagCGCCu -3'
miRNA:   3'- -GCGGCUACGGGgAgGCCCguCG--GCGG- -5'
18773 5' -65.2 NC_004683.1 + 2832 0.67 0.220394
Target:  5'- cCGCCGA-GCUCg-CCGcGGCcGCCGCg -3'
miRNA:   3'- -GCGGCUaCGGGgaGGC-CCGuCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 3259 0.68 0.194717
Target:  5'- gGCCGcgGCgaCCUacucaaacuaCGGGCAGgcCCGCCg -3'
miRNA:   3'- gCGGCuaCGg-GGAg---------GCCCGUC--GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 4622 0.67 0.231449
Target:  5'- uGCCGGUGCaCCCUcgcaCCGGcCuGCgUGCCa -3'
miRNA:   3'- gCGGCUACG-GGGA----GGCCcGuCG-GCGG- -5'
18773 5' -65.2 NC_004683.1 + 6662 0.66 0.287057
Target:  5'- aCGCCG-UGCUgg-CCGcGGCGcGCCGCUg -3'
miRNA:   3'- -GCGGCuACGGggaGGC-CCGU-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 6735 0.66 0.273849
Target:  5'- aGUCGAcgGCCC----GGGCGGCCGCg -3'
miRNA:   3'- gCGGCUa-CGGGgaggCCCGUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 7443 0.66 0.293846
Target:  5'- gGCCGAucaUGCCgaaauaugaCCUCgaCGGGCAGgUGCa -3'
miRNA:   3'- gCGGCU---ACGG---------GGAG--GCCCGUCgGCGg -5'
18773 5' -65.2 NC_004683.1 + 7456 0.71 0.113584
Target:  5'- gGUCGA-GCgCCUCCGGGUgcucgguGCCGUCg -3'
miRNA:   3'- gCGGCUaCGgGGAGGCCCGu------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 7957 0.66 0.273849
Target:  5'- uGCgCGAUGCCCUgcgccuuggUCGGGguGUCGgguCCg -3'
miRNA:   3'- gCG-GCUACGGGGa--------GGCCCguCGGC---GG- -5'
18773 5' -65.2 NC_004683.1 + 8184 0.69 0.159078
Target:  5'- uGUCGGUGCCagCCUCgGGGUcgucggcGCCGUCg -3'
miRNA:   3'- gCGGCUACGG--GGAGgCCCGu------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 8261 0.78 0.033788
Target:  5'- uCGCCGAUGCCCCUgCUuGGCcGCgGCCu -3'
miRNA:   3'- -GCGGCUACGGGGA-GGcCCGuCGgCGG- -5'
18773 5' -65.2 NC_004683.1 + 8632 0.7 0.139899
Target:  5'- uCGCUGGUcGCCgCUCgcccaggaUGGGCAGCUGCg -3'
miRNA:   3'- -GCGGCUA-CGGgGAG--------GCCCGUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 9043 0.68 0.189907
Target:  5'- gGCUGAauccgucgGCCUCgCCGGGCAGCU-CCa -3'
miRNA:   3'- gCGGCUa-------CGGGGaGGCCCGUCGGcGG- -5'
18773 5' -65.2 NC_004683.1 + 10841 0.66 0.266795
Target:  5'- gGCCGGUGUggccaCCCUCggagugaUGGGUGGCCgauugcucGCCa -3'
miRNA:   3'- gCGGCUACG-----GGGAG-------GCCCGUCGG--------CGG- -5'
18773 5' -65.2 NC_004683.1 + 11803 0.68 0.189907
Target:  5'- gGCCGAgggUGUCCCaaCCGucGGCGuGCCGCUg -3'
miRNA:   3'- gCGGCU---ACGGGGa-GGC--CCGU-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 11972 0.66 0.261134
Target:  5'- cCGCCc-UGCCCacaCCgGGGCuGUCGCCc -3'
miRNA:   3'- -GCGGcuACGGGga-GG-CCCGuCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 12065 0.68 0.215038
Target:  5'- aGCUGAUcgggcgacaGCCCCggugUGGGCAGCgGCg -3'
miRNA:   3'- gCGGCUA---------CGGGGag--GCCCGUCGgCGg -5'
18773 5' -65.2 NC_004683.1 + 12112 0.66 0.293846
Target:  5'- cCGgCGGUaGCCCCgCgCGGGCGcGCUgGCCc -3'
miRNA:   3'- -GCgGCUA-CGGGGaG-GCCCGU-CGG-CGG- -5'
18773 5' -65.2 NC_004683.1 + 12254 0.67 0.248903
Target:  5'- uGCCGAUGCCCggcgCUGGugGCGGCauagGCUa -3'
miRNA:   3'- gCGGCUACGGGga--GGCC--CGUCGg---CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.