miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18773 5' -65.2 NC_004683.1 + 11972 0.66 0.261134
Target:  5'- cCGCCc-UGCCCacaCCgGGGCuGUCGCCc -3'
miRNA:   3'- -GCGGcuACGGGga-GG-CCCGuCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 35514 0.68 0.199634
Target:  5'- aCGCUGcguuugGCCCgUCCGauGGCAuaugccguuGCCGCCu -3'
miRNA:   3'- -GCGGCua----CGGGgAGGC--CCGU---------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 12639 0.67 0.225864
Target:  5'- gGCCGcgGCgCCgcugCUGGGCccGCUGUCg -3'
miRNA:   3'- gCGGCuaCGgGGa---GGCCCGu-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 21349 0.67 0.228084
Target:  5'- gCGgUGGUGCCCCUguucgucaccggcgaCUGGGCAuGCgGCg -3'
miRNA:   3'- -GCgGCUACGGGGA---------------GGCCCGU-CGgCGg -5'
18773 5' -65.2 NC_004683.1 + 16864 0.67 0.230885
Target:  5'- uCGUCGucGCgCCCgagCCGGGCGaggacucGCCGCUg -3'
miRNA:   3'- -GCGGCuaCG-GGGa--GGCCCGU-------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 4622 0.67 0.231449
Target:  5'- uGCCGGUGCaCCCUcgcaCCGGcCuGCgUGCCa -3'
miRNA:   3'- gCGGCUACG-GGGA----GGCCcGuCG-GCGG- -5'
18773 5' -65.2 NC_004683.1 + 12254 0.67 0.248903
Target:  5'- uGCCGAUGCCCggcgCUGGugGCGGCauagGCUa -3'
miRNA:   3'- gCGGCUACGGGga--GGCC--CGUCGg---CGG- -5'
18773 5' -65.2 NC_004683.1 + 25135 0.67 0.254958
Target:  5'- gGCCGccGUCaCCggugCGGGUAGCgGCCu -3'
miRNA:   3'- gCGGCuaCGG-GGag--GCCCGUCGgCGG- -5'
18773 5' -65.2 NC_004683.1 + 25885 0.66 0.260511
Target:  5'- gCGUCGA-GUUCg-CCGGGCagacgcuGGCCGCCu -3'
miRNA:   3'- -GCGGCUaCGGGgaGGCCCG-------UCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 3259 0.68 0.194717
Target:  5'- gGCCGcgGCgaCCUacucaaacuaCGGGCAGgcCCGCCg -3'
miRNA:   3'- gCGGCuaCGg-GGAg---------GCCCGUC--GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 49361 0.69 0.180598
Target:  5'- gGCCGGUGCCCCUgcaccugccCCGGauacgaaCCGCCc -3'
miRNA:   3'- gCGGCUACGGGGA---------GGCCcguc---GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 48607 0.69 0.180598
Target:  5'- gGCCGAUGCaCCCcgaCUGGGC--CCGCg -3'
miRNA:   3'- gCGGCUACG-GGGa--GGCCCGucGGCGg -5'
18773 5' -65.2 NC_004683.1 + 26419 0.74 0.070384
Target:  5'- cCGCUGGUGCCCg-CCGGu--GCCGCCg -3'
miRNA:   3'- -GCGGCUACGGGgaGGCCcguCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 13018 0.74 0.076081
Target:  5'- gCGCCGGUgGCCCCggcgacuUCCGGGUGGgauucaaCGCCa -3'
miRNA:   3'- -GCGGCUA-CGGGG-------AGGCCCGUCg------GCGG- -5'
18773 5' -65.2 NC_004683.1 + 27947 0.73 0.087189
Target:  5'- gGCCccUGCCUCgCCGGGCGG-CGCCa -3'
miRNA:   3'- gCGGcuACGGGGaGGCCCGUCgGCGG- -5'
18773 5' -65.2 NC_004683.1 + 21912 0.7 0.135974
Target:  5'- uGCUGGUGCgucgggcaauCCCggcaaUCCgcccggcgguggcGGGCGGCCGCCg -3'
miRNA:   3'- gCGGCUACG----------GGG-----AGG-------------CCCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 8632 0.7 0.139899
Target:  5'- uCGCUGGUcGCCgCUCgcccaggaUGGGCAGCUGCg -3'
miRNA:   3'- -GCGGCUA-CGGgGAG--------GCCCGUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 38510 0.69 0.159078
Target:  5'- aCGCCGAcGCCUUg--GGGguGCCGCa -3'
miRNA:   3'- -GCGGCUaCGGGGaggCCCguCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 19203 0.69 0.167394
Target:  5'- gCGCCGAUGUgaaguacgaauCCCU---GGUGGCCGCCg -3'
miRNA:   3'- -GCGGCUACG-----------GGGAggcCCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 46591 0.69 0.167394
Target:  5'- uGCUGGUGCCggUCgaGGGCcgcgacggcaaGGCCGCCg -3'
miRNA:   3'- gCGGCUACGGggAGg-CCCG-----------UCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.