Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18775 | 3' | -59.7 | NC_004683.1 | + | 56310 | 0.68 | 0.438991 |
Target: 5'- uCGAUGUCG-GGUug-CCaGCGUCGGGGa -3' miRNA: 3'- -GCUACGGCgCCAucaGG-CGCGGCUCC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 52321 | 0.74 | 0.164007 |
Target: 5'- uGGUGCCGCGccGGcCCGgguCGCCGAGGc -3' miRNA: 3'- gCUACGGCGCcaUCaGGC---GCGGCUCC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 52018 | 0.68 | 0.402853 |
Target: 5'- cCGAaauCUGCGGcguucCCGCGCCGAGGc -3' miRNA: 3'- -GCUac-GGCGCCauca-GGCGCGGCUCC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 49051 | 0.7 | 0.336507 |
Target: 5'- cCGAUGCaCGCGcccgaaugGGUcaCCGCGCCGcGGg -3' miRNA: 3'- -GCUACG-GCGCca------UCA--GGCGCGGCuCC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 48701 | 0.68 | 0.410819 |
Target: 5'- ---gGUCGCGG-AGUCCGCgggcccaGUCGGGGu -3' miRNA: 3'- gcuaCGGCGCCaUCAGGCG-------CGGCUCC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 48220 | 0.68 | 0.394117 |
Target: 5'- uGAUGCaCGCGGcGGgaacaaaUCGCGCCGAa- -3' miRNA: 3'- gCUACG-GCGCCaUCa------GGCGCGGCUcc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 46545 | 0.67 | 0.486643 |
Target: 5'- aCGAUGgCGCGGa--UCCGgGCCGGc- -3' miRNA: 3'- -GCUACgGCGCCaucAGGCgCGGCUcc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 46454 | 0.66 | 0.526458 |
Target: 5'- gGA-GCCGCuGUuccGUCCGgcCGCCGAGa -3' miRNA: 3'- gCUaCGGCGcCAu--CAGGC--GCGGCUCc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 45235 | 0.68 | 0.394117 |
Target: 5'- ---cGCUGCGGUcggccAGcCCGUGCUGAGa -3' miRNA: 3'- gcuaCGGCGCCA-----UCaGGCGCGGCUCc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 44855 | 0.69 | 0.377018 |
Target: 5'- ---cGCCGUGGUGGcCCG-GCCugGAGGc -3' miRNA: 3'- gcuaCGGCGCCAUCaGGCgCGG--CUCC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 44376 | 0.66 | 0.510373 |
Target: 5'- uCGGUGCCcgggcgaucgucggcGCGGaucgCCGCGUCGAGc -3' miRNA: 3'- -GCUACGG---------------CGCCaucaGGCGCGGCUCc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 42576 | 0.69 | 0.34435 |
Target: 5'- cCGAgcgcGCCGCGGcGGUCgGgGCCGGu- -3' miRNA: 3'- -GCUa---CGGCGCCaUCAGgCgCGGCUcc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 41050 | 0.71 | 0.278492 |
Target: 5'- gCGAUGCgCGCGGccaGGUCgGCgugGCCGAcGGg -3' miRNA: 3'- -GCUACG-GCGCCa--UCAGgCG---CGGCU-CC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 40225 | 0.66 | 0.526458 |
Target: 5'- aCGAcGCCGagcaGGcCCGCGCCGAGc -3' miRNA: 3'- -GCUaCGGCgccaUCaGGCGCGGCUCc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 39808 | 0.67 | 0.45774 |
Target: 5'- cCGGaGCCaGCGGUcgaugaguuggGGUCCGCgugagugcgcucGCCGAGa -3' miRNA: 3'- -GCUaCGG-CGCCA-----------UCAGGCG------------CGGCUCc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 38905 | 0.72 | 0.23686 |
Target: 5'- gGAUGCCGCGGaaugcucgucucugAGccuguuUCCGCGUCGAGcGg -3' miRNA: 3'- gCUACGGCGCCa-------------UC------AGGCGCGGCUC-C- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 33934 | 0.67 | 0.486643 |
Target: 5'- uGAUgGCCuGCGGUGGUCC-CGgCGAc- -3' miRNA: 3'- gCUA-CGG-CGCCAUCAGGcGCgGCUcc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 33600 | 0.68 | 0.41171 |
Target: 5'- gCGAUugaGCCGCuGGUAGUaCCGCa-CGGGGc -3' miRNA: 3'- -GCUA---CGGCG-CCAUCA-GGCGcgGCUCC- -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 32604 | 0.66 | 0.506383 |
Target: 5'- gGGUGCUcaagGCGGccGGUCUGCGCCa--- -3' miRNA: 3'- gCUACGG----CGCCa-UCAGGCGCGGcucc -5' |
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18775 | 3' | -59.7 | NC_004683.1 | + | 31543 | 0.66 | 0.520403 |
Target: 5'- aCGA-GCCGCGGcaggaauggccguuuUGGgugaccgCCGcCGCCGuGGg -3' miRNA: 3'- -GCUaCGGCGCC---------------AUCa------GGC-GCGGCuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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