miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 5' -56.1 NC_004683.1 + 5045 0.71 0.427891
Target:  5'- -gCC-CugCGAGGAaccgGCCUCGACGCg -3'
miRNA:   3'- agGGaGugGCUCUUg---UGGAGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 42447 0.71 0.427891
Target:  5'- aUUCCggcCACUacGAACACCUCG-CGCCa -3'
miRNA:   3'- -AGGGa--GUGGcuCUUGUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 52862 0.71 0.437322
Target:  5'- -gCCUCGgCGAGcAGCGCCucuugcagugucUCGACGUCg -3'
miRNA:   3'- agGGAGUgGCUC-UUGUGG------------AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 51331 0.71 0.441128
Target:  5'- cUCCCa-GCCGAGGGCcuucugcgacggcuuGCCgagcccguUCGACGCCa -3'
miRNA:   3'- -AGGGagUGGCUCUUG---------------UGG--------AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 6628 0.7 0.456535
Target:  5'- uUCgCCgacaaCACCGAGGcucagGCuGCCaUCGACGCCg -3'
miRNA:   3'- -AG-GGa----GUGGCUCU-----UG-UGG-AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 7251 0.7 0.456536
Target:  5'- gCCC-CAcCCGGGcGCACCcgucucagCGACGCCc -3'
miRNA:   3'- aGGGaGU-GGCUCuUGUGGa-------GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 47183 0.7 0.466311
Target:  5'- aUCUCUCGCgGcuccagcaugcGGAACAggacauCCUCGACGUCg -3'
miRNA:   3'- -AGGGAGUGgC-----------UCUUGU------GGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 1358 0.7 0.475201
Target:  5'- aUCCCgccgaguUCgGCCGcGAGCGCCUCGGCuggcacgacaaGCCg -3'
miRNA:   3'- -AGGG-------AG-UGGCuCUUGUGGAGCUG-----------CGG- -5'
18775 5' -56.1 NC_004683.1 + 25985 0.7 0.476194
Target:  5'- aCCCgaaCACCGAGGcggccagcgucuGCccggcgaaCUCGACGCCg -3'
miRNA:   3'- aGGGa--GUGGCUCU------------UGug------GAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 47647 0.7 0.476194
Target:  5'- gCCgUCGCaGGGGACGCCccauUCGGCGaCCa -3'
miRNA:   3'- aGGgAGUGgCUCUUGUGG----AGCUGC-GG- -5'
18775 5' -56.1 NC_004683.1 + 531 0.7 0.476194
Target:  5'- aCUCgucCACCG-GAucCGCCUCGACcGCCg -3'
miRNA:   3'- aGGGa--GUGGCuCUu-GUGGAGCUG-CGG- -5'
18775 5' -56.1 NC_004683.1 + 40401 0.7 0.496264
Target:  5'- cUCgCUCAUCGGGucacCGCCgcggCGAUGCCc -3'
miRNA:   3'- -AGgGAGUGGCUCuu--GUGGa---GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 40873 0.7 0.496264
Target:  5'- -gCCUCGCCGucggcGAGCGCgUCGGuCGCg -3'
miRNA:   3'- agGGAGUGGCu----CUUGUGgAGCU-GCGg -5'
18775 5' -56.1 NC_004683.1 + 13107 0.69 0.506441
Target:  5'- aUCCCacccggaagUCGCCGGGGcCACC--GGCGCCc -3'
miRNA:   3'- -AGGG---------AGUGGCUCUuGUGGagCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 24125 0.69 0.516706
Target:  5'- cUCCCagACUGcuuGAGCAUCUCGuCGCUc -3'
miRNA:   3'- -AGGGagUGGCu--CUUGUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 14192 0.69 0.516706
Target:  5'- gCCC-CACCGAGGuugagaucaaACugCUggugCGugGCCg -3'
miRNA:   3'- aGGGaGUGGCUCU----------UGugGA----GCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 4193 0.69 0.520836
Target:  5'- aCCCUCAaggaauugaagguccCCGAGAucGgGCCggugaCGugGCCg -3'
miRNA:   3'- aGGGAGU---------------GGCUCU--UgUGGa----GCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 27780 0.69 0.527054
Target:  5'- aCCUUUACCGAGAAuCGCgaaguaGugGCCg -3'
miRNA:   3'- aGGGAGUGGCUCUU-GUGgag---CugCGG- -5'
18775 5' -56.1 NC_004683.1 + 15894 0.69 0.537478
Target:  5'- --gCUCGCCcgaaugcAGGACgACCUCGACGUCg -3'
miRNA:   3'- aggGAGUGGc------UCUUG-UGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 19640 0.69 0.537478
Target:  5'- aUCCgCgaucgCGCCGAGGACGgguuCaaCGACGCCg -3'
miRNA:   3'- -AGG-Ga----GUGGCUCUUGU----GgaGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.