miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 5' -56.1 NC_004683.1 + 15065 1.13 0.000567
Target:  5'- cUCCCUCACCGAGAACACCUCGACGCCg -3'
miRNA:   3'- -AGGGAGUGGCUCUUGUGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 41757 0.83 0.071943
Target:  5'- aUCUCUCGCCGAGcugcguguagucgcGCACCUCGAgCGCCa -3'
miRNA:   3'- -AGGGAGUGGCUCu-------------UGUGGAGCU-GCGG- -5'
18775 5' -56.1 NC_004683.1 + 51755 0.8 0.114405
Target:  5'- gCCCUCGCCGAG--UACUUCGcCGCCa -3'
miRNA:   3'- aGGGAGUGGCUCuuGUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 32995 0.8 0.117602
Target:  5'- cCCCUCACCGAGAGCGagguggaGACGCUa -3'
miRNA:   3'- aGGGAGUGGCUCUUGUggag---CUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 12790 0.78 0.146322
Target:  5'- cCCCgcgCGCCGAGGAUGCCgagGAUGCCg -3'
miRNA:   3'- aGGGa--GUGGCUCUUGUGGag-CUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 1077 0.78 0.162969
Target:  5'- cCCCUCGUCGAGGAuCACCUUGuuGCCg -3'
miRNA:   3'- aGGGAGUGGCUCUU-GUGGAGCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 51079 0.76 0.223489
Target:  5'- gCCCUCGggcagaCGAGAcC-CCUCGGCGCCu -3'
miRNA:   3'- aGGGAGUg-----GCUCUuGuGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 33431 0.75 0.253902
Target:  5'- aCCC-CACCGAGAAagagGCCcgCGACGCg -3'
miRNA:   3'- aGGGaGUGGCUCUUg---UGGa-GCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 1826 0.73 0.309516
Target:  5'- gCCCgCGCCGuuuguCACCUCGuCGCCg -3'
miRNA:   3'- aGGGaGUGGCucuu-GUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 39193 0.73 0.317085
Target:  5'- cUCCaaCGCCGAcAACGCCUCGGugaacCGCCa -3'
miRNA:   3'- -AGGgaGUGGCUcUUGUGGAGCU-----GCGG- -5'
18775 5' -56.1 NC_004683.1 + 8820 0.73 0.332642
Target:  5'- gCCCUCACCGAacGCGCCggCGAgauaccaGCCu -3'
miRNA:   3'- aGGGAGUGGCUcuUGUGGa-GCUg------CGG- -5'
18775 5' -56.1 NC_004683.1 + 39146 0.73 0.340627
Target:  5'- gCCCgCAUCGAGAaggacGCACCgcUCGuCGCCa -3'
miRNA:   3'- aGGGaGUGGCUCU-----UGUGG--AGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 130 0.72 0.346299
Target:  5'- aCCUgcagaaagcggcauUCACgCGGGGcaaGCGCCUCGGCGUCg -3'
miRNA:   3'- aGGG--------------AGUG-GCUCU---UGUGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 20948 0.72 0.357012
Target:  5'- uUUCgUCGCaCGcGAACGCUUCGACGCg -3'
miRNA:   3'- -AGGgAGUG-GCuCUUGUGGAGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 11508 0.72 0.382608
Target:  5'- gCCC-CACCGcacGAGCAgCguUCGGCGCCg -3'
miRNA:   3'- aGGGaGUGGCu--CUUGUgG--AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 31624 0.72 0.391407
Target:  5'- aCCCa-ACCGAGcuCGCCggCGugGCCg -3'
miRNA:   3'- aGGGagUGGCUCuuGUGGa-GCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 11306 0.72 0.391407
Target:  5'- cCCUUCugCGuGGACGCCacgaucaggUCGaACGCCu -3'
miRNA:   3'- aGGGAGugGCuCUUGUGG---------AGC-UGCGG- -5'
18775 5' -56.1 NC_004683.1 + 48959 0.72 0.391407
Target:  5'- gCCCUCACCGGGu-CACCUCcGgGUa -3'
miRNA:   3'- aGGGAGUGGCUCuuGUGGAGcUgCGg -5'
18775 5' -56.1 NC_004683.1 + 2852 0.71 0.399438
Target:  5'- gUUUCUgGCCGAGGaugucguGCACUUCG-CGCCg -3'
miRNA:   3'- -AGGGAgUGGCUCU-------UGUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 55166 0.71 0.400337
Target:  5'- gUCCC-CACCGaAGAACGCaaagcCGuCGCCg -3'
miRNA:   3'- -AGGGaGUGGC-UCUUGUGga---GCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.