miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 5' -56.1 NC_004683.1 + 130 0.72 0.346299
Target:  5'- aCCUgcagaaagcggcauUCACgCGGGGcaaGCGCCUCGGCGUCg -3'
miRNA:   3'- aGGG--------------AGUG-GCUCU---UGUGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 224 0.68 0.569146
Target:  5'- aUCCCacuCCGA--GCGCCgCGAUGCCg -3'
miRNA:   3'- -AGGGaguGGCUcuUGUGGaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 531 0.7 0.476194
Target:  5'- aCUCgucCACCG-GAucCGCCUCGACcGCCg -3'
miRNA:   3'- aGGGa--GUGGCuCUu-GUGGAGCUG-CGG- -5'
18775 5' -56.1 NC_004683.1 + 822 0.67 0.622802
Target:  5'- -aCCUgAUCGAGAGCACCcCGucucugGCCa -3'
miRNA:   3'- agGGAgUGGCUCUUGUGGaGCug----CGG- -5'
18775 5' -56.1 NC_004683.1 + 1077 0.78 0.162969
Target:  5'- cCCCUCGUCGAGGAuCACCUUGuuGCCg -3'
miRNA:   3'- aGGGAGUGGCUCUU-GUGGAGCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 1358 0.7 0.475201
Target:  5'- aUCCCgccgaguUCgGCCGcGAGCGCCUCGGCuggcacgacaaGCCg -3'
miRNA:   3'- -AGGG-------AG-UGGCuCUUGUGGAGCUG-----------CGG- -5'
18775 5' -56.1 NC_004683.1 + 1826 0.73 0.309516
Target:  5'- gCCCgCGCCGuuuguCACCUCGuCGCCg -3'
miRNA:   3'- aGGGaGUGGCucuu-GUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 2116 0.66 0.694778
Target:  5'- uUCCUguugUGCCGucacGAccagaacggcucccACACCUCGACaGCCg -3'
miRNA:   3'- -AGGGa---GUGGCu---CU--------------UGUGGAGCUG-CGG- -5'
18775 5' -56.1 NC_004683.1 + 2836 0.67 0.676641
Target:  5'- gCCgC-CGCCGAGcuCGCCgCGGcCGCCg -3'
miRNA:   3'- aGG-GaGUGGCUCuuGUGGaGCU-GCGG- -5'
18775 5' -56.1 NC_004683.1 + 2852 0.71 0.399438
Target:  5'- gUUUCUgGCCGAGGaugucguGCACUUCG-CGCCg -3'
miRNA:   3'- -AGGGAgUGGCUCU-------UGUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 4193 0.69 0.520836
Target:  5'- aCCCUCAaggaauugaagguccCCGAGAucGgGCCggugaCGugGCCg -3'
miRNA:   3'- aGGGAGU---------------GGCUCU--UgUGGa----GCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 4237 0.67 0.622802
Target:  5'- gUUCCUCuuCGGGAACGuCCUCGuaccacgugcgGCGCa -3'
miRNA:   3'- -AGGGAGugGCUCUUGU-GGAGC-----------UGCGg -5'
18775 5' -56.1 NC_004683.1 + 4486 0.67 0.665914
Target:  5'- aCCCUCcgagcCCGuagguGAGCACCcgUCGACaCCg -3'
miRNA:   3'- aGGGAGu----GGCu----CUUGUGG--AGCUGcGG- -5'
18775 5' -56.1 NC_004683.1 + 5024 0.67 0.676641
Target:  5'- gCCCgacagCAUCGAGGACugC-CGAUuCCg -3'
miRNA:   3'- aGGGa----GUGGCUCUUGugGaGCUGcGG- -5'
18775 5' -56.1 NC_004683.1 + 5045 0.71 0.427891
Target:  5'- -gCC-CugCGAGGAaccgGCCUCGACGCg -3'
miRNA:   3'- agGGaGugGCUCUUg---UGGAGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 6562 0.67 0.64438
Target:  5'- aCCCggcUCGgCGcuGGCGuCCUCGACGCUg -3'
miRNA:   3'- aGGG---AGUgGCucUUGU-GGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 6628 0.7 0.456535
Target:  5'- uUCgCCgacaaCACCGAGGcucagGCuGCCaUCGACGCCg -3'
miRNA:   3'- -AG-GGa----GUGGCUCU-----UG-UGG-AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 7251 0.7 0.456536
Target:  5'- gCCC-CAcCCGGGcGCACCcgucucagCGACGCCc -3'
miRNA:   3'- aGGGaGU-GGCUCuUGUGGa-------GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 8070 0.66 0.729457
Target:  5'- gCCgUUCugUGAGGugACCcgcaucgaCGGCGCCg -3'
miRNA:   3'- aGG-GAGugGCUCUugUGGa-------GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 8109 0.67 0.670209
Target:  5'- cCCCgaggcuggCACCGAcaaccccguGAuccaacuggacuucuACGCgCUCGGCGCCg -3'
miRNA:   3'- aGGGa-------GUGGCU---------CU---------------UGUG-GAGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.