miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 5' -56.1 NC_004683.1 + 41020 0.68 0.61202
Target:  5'- aCCC-CAa-GGGcaGugACCUCGGCGCCu -3'
miRNA:   3'- aGGGaGUggCUC--UugUGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 19640 0.69 0.537478
Target:  5'- aUCCgCgaucgCGCCGAGGACGgguuCaaCGACGCCg -3'
miRNA:   3'- -AGG-Ga----GUGGCUCUUGU----GgaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 52245 0.69 0.54692
Target:  5'- aCCCggGCCGGcgcGGCACCaaggcgcacgagcUCGACGCCu -3'
miRNA:   3'- aGGGagUGGCUc--UUGUGG-------------AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 52033 0.69 0.547973
Target:  5'- uUCCCgCGCCGAGGcugggaACcguGCC-CGACGCg -3'
miRNA:   3'- -AGGGaGUGGCUCU------UG---UGGaGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 12221 0.68 0.558531
Target:  5'- uUCCCaCGCCcgccggggcGGGAGCGCC-CGGCGUg -3'
miRNA:   3'- -AGGGaGUGG---------CUCUUGUGGaGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 43284 0.68 0.558531
Target:  5'- gCCCUCgggcucGCCGAGAAC-CCgCGAUuCCg -3'
miRNA:   3'- aGGGAG------UGGCUCUUGuGGaGCUGcGG- -5'
18775 5' -56.1 NC_004683.1 + 30733 0.68 0.569146
Target:  5'- aCgCUCAUCGAGuAGC-CCaUCGACgGCCg -3'
miRNA:   3'- aGgGAGUGGCUC-UUGuGG-AGCUG-CGG- -5'
18775 5' -56.1 NC_004683.1 + 54128 0.68 0.569146
Target:  5'- aCCCUguUUGAGAuCGauaUCGACGCCg -3'
miRNA:   3'- aGGGAguGGCUCUuGUgg-AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 224 0.68 0.569146
Target:  5'- aUCCCacuCCGA--GCGCCgCGAUGCCg -3'
miRNA:   3'- -AGGGaguGGCUcuUGUGGaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 15894 0.69 0.537478
Target:  5'- --gCUCGCCcgaaugcAGGACgACCUCGACGUCg -3'
miRNA:   3'- aggGAGUGGc------UCUUG-UGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 4193 0.69 0.520836
Target:  5'- aCCCUCAaggaauugaagguccCCGAGAucGgGCCggugaCGugGCCg -3'
miRNA:   3'- aGGGAGU---------------GGCUCU--UgUGGa----GCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 14192 0.69 0.516706
Target:  5'- gCCC-CACCGAGGuugagaucaaACugCUggugCGugGCCg -3'
miRNA:   3'- aGGGaGUGGCUCU----------UGugGA----GCugCGG- -5'
18775 5' -56.1 NC_004683.1 + 39193 0.73 0.317085
Target:  5'- cUCCaaCGCCGAcAACGCCUCGGugaacCGCCa -3'
miRNA:   3'- -AGGgaGUGGCUcUUGUGGAGCU-----GCGG- -5'
18775 5' -56.1 NC_004683.1 + 39146 0.73 0.340627
Target:  5'- gCCCgCAUCGAGAaggacGCACCgcUCGuCGCCa -3'
miRNA:   3'- aGGGaGUGGCUCU-----UGUGG--AGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 130 0.72 0.346299
Target:  5'- aCCUgcagaaagcggcauUCACgCGGGGcaaGCGCCUCGGCGUCg -3'
miRNA:   3'- aGGG--------------AGUG-GCUCU---UGUGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 11508 0.72 0.382608
Target:  5'- gCCC-CACCGcacGAGCAgCguUCGGCGCCg -3'
miRNA:   3'- aGGGaGUGGCu--CUUGUgG--AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 2852 0.71 0.399438
Target:  5'- gUUUCUgGCCGAGGaugucguGCACUUCG-CGCCg -3'
miRNA:   3'- -AGGGAgUGGCUCU-------UGUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 55166 0.71 0.400337
Target:  5'- gUCCC-CACCGaAGAACGCaaagcCGuCGCCg -3'
miRNA:   3'- -AGGGaGUGGC-UCUUGUGga---GCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 6628 0.7 0.456535
Target:  5'- uUCgCCgacaaCACCGAGGcucagGCuGCCaUCGACGCCg -3'
miRNA:   3'- -AG-GGa----GUGGCUCU-----UG-UGG-AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 1358 0.7 0.475201
Target:  5'- aUCCCgccgaguUCgGCCGcGAGCGCCUCGGCuggcacgacaaGCCg -3'
miRNA:   3'- -AGGG-------AG-UGGCuCUUGUGGAGCUG-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.