Results 1 - 20 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 17775 | 0.65 | 0.736695 |
Target: 5'- gCCCguggACCGAGAu--CCUCGAagaggucaacgugaCGCCg -3' miRNA: 3'- aGGGag--UGGCUCUuguGGAGCU--------------GCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 23125 | 0.66 | 0.697962 |
Target: 5'- gCgCUCAUCGAGAA-GCUcaUCGACGaCCg -3' miRNA: 3'- aGgGAGUGGCUCUUgUGG--AGCUGC-GG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 45659 | 0.66 | 0.687327 |
Target: 5'- -aCCagGCCGucaacGAGCGCCUUGACcguggGCCa -3' miRNA: 3'- agGGagUGGCu----CUUGUGGAGCUG-----CGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 56193 | 0.66 | 0.687327 |
Target: 5'- aCCCgCAUCGucAGCuucuACCUCGGcCGCCa -3' miRNA: 3'- aGGGaGUGGCucUUG----UGGAGCU-GCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 54035 | 0.66 | 0.687327 |
Target: 5'- aUCCgCGCCGAcGAACucgcccagcuccGCUcCGACGCCa -3' miRNA: 3'- aGGGaGUGGCU-CUUG------------UGGaGCUGCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 12686 | 0.66 | 0.691587 |
Target: 5'- aCCCgauCCGAGGcggGCAcggcauccucggcauCCUCGGCGCg -3' miRNA: 3'- aGGGaguGGCUCU---UGU---------------GGAGCUGCGg -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 45494 | 0.66 | 0.697962 |
Target: 5'- cCCCgCACCGAc--CGgCUCGuCGCCa -3' miRNA: 3'- aGGGaGUGGCUcuuGUgGAGCuGCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 11846 | 0.66 | 0.702199 |
Target: 5'- aUCCUCACCgGAGAccugcccgcuggugcGCACC-CGACagauauuccgGCCc -3' miRNA: 3'- aGGGAGUGG-CUCU---------------UGUGGaGCUG----------CGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 43890 | 0.66 | 0.719038 |
Target: 5'- gCCCU-ACCGc-GACACC-CGGCGCg -3' miRNA: 3'- aGGGAgUGGCucUUGUGGaGCUGCGg -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 21157 | 0.66 | 0.719038 |
Target: 5'- aUCCCg-GCCGcGGAccacggugucgGCACCgaCGACGCUg -3' miRNA: 3'- -AGGGagUGGC-UCU-----------UGUGGa-GCUGCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 10441 | 0.66 | 0.729457 |
Target: 5'- gCCCgCGUCGGcGAACGCCuucUCGGCGCg -3' miRNA: 3'- aGGGaGUGGCU-CUUGUGG---AGCUGCGg -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 44558 | 0.66 | 0.729457 |
Target: 5'- gUUCCUCGCCGAuu-CGgC-CGGCGUCa -3' miRNA: 3'- -AGGGAGUGGCUcuuGUgGaGCUGCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 45833 | 0.66 | 0.723216 |
Target: 5'- -aCCUgGCCGucGAGacgcacaacacgaauCACCcCGACGCCg -3' miRNA: 3'- agGGAgUGGCu-CUU---------------GUGGaGCUGCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 26739 | 0.66 | 0.719038 |
Target: 5'- aCCCgUCugCGAuGAGCuucuuugccACCUCGGCGg- -3' miRNA: 3'- aGGG-AGugGCU-CUUG---------UGGAGCUGCgg -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 8770 | 0.66 | 0.729457 |
Target: 5'- cCCCUCgucgcgGCCGAGcaucGACACC--GACGaCCa -3' miRNA: 3'- aGGGAG------UGGCUC----UUGUGGagCUGC-GG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 56243 | 0.66 | 0.729457 |
Target: 5'- aCCCgaCAUCGAGAACGCgCUacaGCGCg -3' miRNA: 3'- aGGGa-GUGGCUCUUGUG-GAgc-UGCGg -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 8070 | 0.66 | 0.729457 |
Target: 5'- gCCgUUCugUGAGGugACCcgcaucgaCGGCGCCg -3' miRNA: 3'- aGG-GAGugGCUCUugUGGa-------GCUGCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 40305 | 0.66 | 0.729457 |
Target: 5'- ---aUCGCCGAGGGCAUCgccgCGGCGgUg -3' miRNA: 3'- agggAGUGGCUCUUGUGGa---GCUGCgG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 39593 | 0.66 | 0.729457 |
Target: 5'- aCCC-CGaaGAGGACcUCUgGGCGCCc -3' miRNA: 3'- aGGGaGUggCUCUUGuGGAgCUGCGG- -5' |
|||||||
18775 | 5' | -56.1 | NC_004683.1 | + | 42269 | 0.66 | 0.729457 |
Target: 5'- gUCCCgaguUCGAGGGCgugGCCUCauGACGCg -3' miRNA: 3'- -AGGGagu-GGCUCUUG---UGGAG--CUGCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home