miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18777 5' -64.3 NC_004683.1 + 6051 0.7 0.168999
Target:  5'- gCCUCGGCCucacCCACcGGcCGGCCCaGCa -3'
miRNA:   3'- gGGGGCCGGc---GGUGuCCaGCUGGG-CG- -5'
18777 5' -64.3 NC_004683.1 + 1863 0.7 0.173306
Target:  5'- gCCUCUGGCCGauucggugaCCGCAGGcaagaugcgCGACCuCGCc -3'
miRNA:   3'- -GGGGGCCGGC---------GGUGUCCa--------GCUGG-GCG- -5'
18777 5' -64.3 NC_004683.1 + 23475 0.7 0.177712
Target:  5'- gCCCUCGucgguGCCGCCGCGGGcguuguagagCGACUCGa -3'
miRNA:   3'- -GGGGGC-----CGGCGGUGUCCa---------GCUGGGCg -5'
18777 5' -64.3 NC_004683.1 + 53523 0.7 0.177712
Target:  5'- gCCCUCGGCgGCC--AGGUUGucgUCCGCg -3'
miRNA:   3'- -GGGGGCCGgCGGugUCCAGCu--GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 46100 0.7 0.182216
Target:  5'- aCCgCUCGGCCGCCGCGucGGgcaGcACUCGCc -3'
miRNA:   3'- -GG-GGGCCGGCGGUGU--CCag-C-UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 45666 0.7 0.191528
Target:  5'- -aCCCGGCCGCCGgCAcaUCGGCgCUGUg -3'
miRNA:   3'- ggGGGCCGGCGGU-GUccAGCUG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 32069 0.69 0.196339
Target:  5'- gCCUCaGCCGcCCGCGGGUUGGuacCCCGa -3'
miRNA:   3'- gGGGGcCGGC-GGUGUCCAGCU---GGGCg -5'
18777 5' -64.3 NC_004683.1 + 44663 0.69 0.200759
Target:  5'- gCCCCGGCgaaCCACGacgcgguGGUUGAUCUGCa -3'
miRNA:   3'- gGGGGCCGgc-GGUGU-------CCAGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 56504 0.69 0.201255
Target:  5'- -gCCCGGCCGCaccgcaugGCAGGUaGGCgcaCCGCa -3'
miRNA:   3'- ggGGGCCGGCGg-------UGUCCAgCUG---GGCG- -5'
18777 5' -64.3 NC_004683.1 + 21845 0.69 0.203252
Target:  5'- aCCaUCGGUgGCCGC-GGUCGuugaaccaccggucuGCCCGCg -3'
miRNA:   3'- gGG-GGCCGgCGGUGuCCAGC---------------UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 18420 0.69 0.204256
Target:  5'- cCUCaCCGGCUGCCACAuacagcgugucaucGGUUGccgaugcGCCCGUc -3'
miRNA:   3'- -GGG-GGCCGGCGGUGU--------------CCAGC-------UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 6673 0.69 0.211409
Target:  5'- gCCgCGGCgCGCCGCuGGUgUGGCUgGCa -3'
miRNA:   3'- gGGgGCCG-GCGGUGuCCA-GCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 21939 0.69 0.21665
Target:  5'- uCCgCCCGGCgGUgGCGGG-CGGCC-GCc -3'
miRNA:   3'- -GG-GGGCCGgCGgUGUCCaGCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 23790 0.69 0.227464
Target:  5'- gCCgCCGguGCCGCCGCGGcggaacGUCGAgaaCCCGUc -3'
miRNA:   3'- -GGgGGC--CGGCGGUGUC------CAGCU---GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 48718 0.68 0.233041
Target:  5'- --aCCGGCCGCCguGCAuuGGUCGcggagUCCGCg -3'
miRNA:   3'- gggGGCCGGCGG--UGU--CCAGCu----GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 10061 0.68 0.233041
Target:  5'- gCCgCGGCgGCgACuGGUCGAUCCu- -3'
miRNA:   3'- gGGgGCCGgCGgUGuCCAGCUGGGcg -5'
18777 5' -64.3 NC_004683.1 + 36931 0.68 0.233041
Target:  5'- gCCCCGGCgGuaucCCGgAGGUCaGCuuGCg -3'
miRNA:   3'- gGGGGCCGgC----GGUgUCCAGcUGggCG- -5'
18777 5' -64.3 NC_004683.1 + 41950 0.68 0.233041
Target:  5'- cCCCUCGGCCuGCCAguGa-CGACCguUGCg -3'
miRNA:   3'- -GGGGGCCGG-CGGUguCcaGCUGG--GCG- -5'
18777 5' -64.3 NC_004683.1 + 649 0.68 0.233041
Target:  5'- aCCCCGccaaGUCG-CACAGGUCGGCCa-- -3'
miRNA:   3'- gGGGGC----CGGCgGUGUCCAGCUGGgcg -5'
18777 5' -64.3 NC_004683.1 + 52605 0.68 0.233041
Target:  5'- uUCCuuGGCCGCCuc--GUCGG-CCGCg -3'
miRNA:   3'- -GGGggCCGGCGGugucCAGCUgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.