miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18777 5' -64.3 NC_004683.1 + 16683 1.12 0.000114
Target:  5'- uCCCCCGGCCGCCACAGGUCGACCCGCa -3'
miRNA:   3'- -GGGGGCCGGCGGUGUCCAGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 25130 0.77 0.051865
Target:  5'- gUCCUGGCCGCCgucaccgguGCGGGUagCGGCCUGCu -3'
miRNA:   3'- gGGGGCCGGCGG---------UGUCCA--GCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 44777 0.76 0.067837
Target:  5'- -aCCCGGCgGCgGCGGGcCGcguGCCCGCg -3'
miRNA:   3'- ggGGGCCGgCGgUGUCCaGC---UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 7476 0.76 0.067837
Target:  5'- gCgCCCGGCCGCCGaaucCAGGUCGAgcgccUCCGg -3'
miRNA:   3'- -GgGGGCCGGCGGU----GUCCAGCU-----GGGCg -5'
18777 5' -64.3 NC_004683.1 + 19223 0.76 0.067837
Target:  5'- uCCCUggUGGCCGCCGcCGGGUCGAa-CGCg -3'
miRNA:   3'- -GGGG--GCCGGCGGU-GUCCAGCUggGCG- -5'
18777 5' -64.3 NC_004683.1 + 21157 0.75 0.077508
Target:  5'- aUCCCGGCCGCggacCACGGuGUCGGCaCCGa -3'
miRNA:   3'- gGGGGCCGGCG----GUGUC-CAGCUG-GGCg -5'
18777 5' -64.3 NC_004683.1 + 42656 0.74 0.086183
Target:  5'- gCCCCGaCCGCCGCGGcGcgcUCGGCCuCGCu -3'
miRNA:   3'- gGGGGCcGGCGGUGUC-C---AGCUGG-GCG- -5'
18777 5' -64.3 NC_004683.1 + 3663 0.73 0.106375
Target:  5'- -gCCCGGCCGCCGCuGGagagUGugCgGCa -3'
miRNA:   3'- ggGGGCCGGCGGUGuCCa---GCugGgCG- -5'
18777 5' -64.3 NC_004683.1 + 214 0.73 0.114738
Target:  5'- gCCCCGcgugaauGCCGCUuucuGCAGGUCG-CgCCGCa -3'
miRNA:   3'- gGGGGC-------CGGCGG----UGUCCAGCuG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 57015 0.72 0.124354
Target:  5'- cCCCCCGGgguCUGCguuucCGCAGGUCagaGGCUCGCg -3'
miRNA:   3'- -GGGGGCC---GGCG-----GUGUCCAG---CUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 25253 0.72 0.12994
Target:  5'- gCCCCGagcacGCCGCCgaugaccgagccgaGCAGGcCGcuACCCGCa -3'
miRNA:   3'- gGGGGC-----CGGCGG--------------UGUCCaGC--UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 41179 0.72 0.13095
Target:  5'- gCCCCGGCCGUgGCAGcGgcgCgGGgCCGCu -3'
miRNA:   3'- gGGGGCCGGCGgUGUC-Ca--G-CUgGGCG- -5'
18777 5' -64.3 NC_004683.1 + 25029 0.71 0.147736
Target:  5'- gCCUCGGCguagaaguCGCCGCGGGUCGucacguuggugaucAgCCGCa -3'
miRNA:   3'- gGGGGCCG--------GCGGUGUCCAGC--------------UgGGCG- -5'
18777 5' -64.3 NC_004683.1 + 55096 0.71 0.148872
Target:  5'- aUCCCCaGCCGCCgaauGCGGGaUCGAggCCGCc -3'
miRNA:   3'- -GGGGGcCGGCGG----UGUCC-AGCUg-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 18218 0.71 0.152714
Target:  5'- -gUCCGGCCGCCACGGcGUgCGguagguGCCgGCg -3'
miRNA:   3'- ggGGGCCGGCGGUGUC-CA-GC------UGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 27612 0.71 0.156647
Target:  5'- -aCCCaGuuGCCGCgcaaccacgacaGGGUCGACCgGCg -3'
miRNA:   3'- ggGGGcCggCGGUG------------UCCAGCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 12116 0.71 0.156647
Target:  5'- gCCUCCGGCgguaGCCccgcGCGGGcgcgcUGGCCCGCg -3'
miRNA:   3'- -GGGGGCCGg---CGG----UGUCCa----GCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 5013 0.71 0.160671
Target:  5'- gCCgCUGGCCGCCGCucugAGGcuugcCGAUCUGCu -3'
miRNA:   3'- -GGgGGCCGGCGGUG----UCCa----GCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 24592 0.71 0.160671
Target:  5'- aCCUCGGCC-UCAUGGGaggCGACCCGg -3'
miRNA:   3'- gGGGGCCGGcGGUGUCCa--GCUGGGCg -5'
18777 5' -64.3 NC_004683.1 + 18161 0.7 0.168999
Target:  5'- aCCCCGaaGCCGCCGuCAcGGUC-ACCgGCu -3'
miRNA:   3'- gGGGGC--CGGCGGU-GU-CCAGcUGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.