miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18777 5' -64.3 NC_004683.1 + 214 0.73 0.114738
Target:  5'- gCCCCGcgugaauGCCGCUuucuGCAGGUCG-CgCCGCa -3'
miRNA:   3'- gGGGGC-------CGGCGG----UGUCCAGCuG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 265 0.66 0.341503
Target:  5'- gCCCCagucaucggaaccggCGGCUGCUGgGGuGUCGACgCCGa -3'
miRNA:   3'- -GGGG---------------GCCGGCGGUgUC-CAGCUG-GGCg -5'
18777 5' -64.3 NC_004683.1 + 649 0.68 0.233041
Target:  5'- aCCCCGccaaGUCG-CACAGGUCGGCCa-- -3'
miRNA:   3'- gGGGGC----CGGCgGUGUCCAGCUGGgcg -5'
18777 5' -64.3 NC_004683.1 + 1863 0.7 0.173306
Target:  5'- gCCUCUGGCCGauucggugaCCGCAGGcaagaugcgCGACCuCGCc -3'
miRNA:   3'- -GGGGGCCGGC---------GGUGUCCa--------GCUGG-GCG- -5'
18777 5' -64.3 NC_004683.1 + 2226 0.66 0.323577
Target:  5'- aCCCCaGGcCCGCCAgCAcGGcCacGCCCGCc -3'
miRNA:   3'- gGGGG-CC-GGCGGU-GU-CCaGc-UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 2821 0.67 0.304959
Target:  5'- gCCgCGGCCGCCGCGcaccauccGuuccucgaccaccacGUCGACCCa- -3'
miRNA:   3'- gGGgGCCGGCGGUGU--------C---------------CAGCUGGGcg -5'
18777 5' -64.3 NC_004683.1 + 3123 0.68 0.256505
Target:  5'- -aCCCGGgCGCCGaugccgauguGGUCGGCUCGa -3'
miRNA:   3'- ggGGGCCgGCGGUgu--------CCAGCUGGGCg -5'
18777 5' -64.3 NC_004683.1 + 3255 0.68 0.235304
Target:  5'- -gCCUGGCCGCgGCGaccuacucaaacuacGGgcaGGCCCGCc -3'
miRNA:   3'- ggGGGCCGGCGgUGU---------------CCag-CUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 3663 0.73 0.106375
Target:  5'- -gCCCGGCCGCCGCuGGagagUGugCgGCa -3'
miRNA:   3'- ggGGGCCGGCGGUGuCCa---GCugGgCG- -5'
18777 5' -64.3 NC_004683.1 + 3825 0.68 0.262665
Target:  5'- gCCCCUGGCgCGaugaaGC-GGUCGuuCCGCg -3'
miRNA:   3'- -GGGGGCCG-GCgg---UGuCCAGCugGGCG- -5'
18777 5' -64.3 NC_004683.1 + 3880 0.67 0.302169
Target:  5'- aCCaCGGCCGCCACcccaugaucGGcUCGAuCCCGa -3'
miRNA:   3'- gGGgGCCGGCGGUGu--------CC-AGCU-GGGCg -5'
18777 5' -64.3 NC_004683.1 + 4027 0.68 0.244539
Target:  5'- gCCCUCGGgUGCgagCACgGGGUCGACCUcuucaGCg -3'
miRNA:   3'- -GGGGGCCgGCG---GUG-UCCAGCUGGG-----CG- -5'
18777 5' -64.3 NC_004683.1 + 5013 0.71 0.160671
Target:  5'- gCCgCUGGCCGCCGCucugAGGcuugcCGAUCUGCu -3'
miRNA:   3'- -GGgGGCCGGCGGUG----UCCa----GCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 5054 0.66 0.323577
Target:  5'- gCCaCGGCCGCCcuGCgAGGaaccggccUCGACgCGCa -3'
miRNA:   3'- gGGgGCCGGCGG--UG-UCC--------AGCUGgGCG- -5'
18777 5' -64.3 NC_004683.1 + 5984 0.67 0.268946
Target:  5'- gUCCCGcGCCGcCCugGGuGUCGAaCUGCc -3'
miRNA:   3'- gGGGGC-CGGC-GGugUC-CAGCUgGGCG- -5'
18777 5' -64.3 NC_004683.1 + 6051 0.7 0.168999
Target:  5'- gCCUCGGCCucacCCACcGGcCGGCCCaGCa -3'
miRNA:   3'- gGGGGCCGGc---GGUGuCCaGCUGGG-CG- -5'
18777 5' -64.3 NC_004683.1 + 6673 0.69 0.211409
Target:  5'- gCCgCGGCgCGCCGCuGGUgUGGCUgGCa -3'
miRNA:   3'- gGGgGCCG-GCGGUGuCCA-GCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 7342 0.66 0.353847
Target:  5'- uCgUCUGGCCGUCGgGGGUCucgaucgagcuGGCCgGCc -3'
miRNA:   3'- -GgGGGCCGGCGGUgUCCAG-----------CUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 7476 0.76 0.067837
Target:  5'- gCgCCCGGCCGCCGaaucCAGGUCGAgcgccUCCGg -3'
miRNA:   3'- -GgGGGCCGGCGGU----GUCCAGCU-----GGGCg -5'
18777 5' -64.3 NC_004683.1 + 9775 0.66 0.338466
Target:  5'- gCCCCCGGCCagaucaacacGaCCugGCAGGUgaUGGCCaagcaGCu -3'
miRNA:   3'- -GGGGGCCGG----------C-GG--UGUCCA--GCUGGg----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.