miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18777 5' -64.3 NC_004683.1 + 3123 0.68 0.256505
Target:  5'- -aCCCGGgCGCCGaugccgauguGGUCGGCUCGa -3'
miRNA:   3'- ggGGGCCgGCGGUgu--------CCAGCUGGGCg -5'
18777 5' -64.3 NC_004683.1 + 21939 0.69 0.21665
Target:  5'- uCCgCCCGGCgGUgGCGGG-CGGCC-GCc -3'
miRNA:   3'- -GG-GGGCCGgCGgUGUCCaGCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 10061 0.68 0.233041
Target:  5'- gCCgCGGCgGCgACuGGUCGAUCCu- -3'
miRNA:   3'- gGGgGCCGgCGgUGuCCAGCUGGGcg -5'
18777 5' -64.3 NC_004683.1 + 36931 0.68 0.233041
Target:  5'- gCCCCGGCgGuaucCCGgAGGUCaGCuuGCg -3'
miRNA:   3'- gGGGGCCGgC----GGUgUCCAGcUGggCG- -5'
18777 5' -64.3 NC_004683.1 + 3255 0.68 0.235304
Target:  5'- -gCCUGGCCGCgGCGaccuacucaaacuacGGgcaGGCCCGCc -3'
miRNA:   3'- ggGGGCCGGCGgUGU---------------CCag-CUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 53648 0.68 0.235304
Target:  5'- -aCCUGGCCGCggcugaggcugcacuCACAGaGgcgCGACuCCGCg -3'
miRNA:   3'- ggGGGCCGGCG---------------GUGUC-Ca--GCUG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 52067 0.68 0.238732
Target:  5'- gCCCUGGCUGaucgucgaCGCGGGaggCGACCgGUg -3'
miRNA:   3'- gGGGGCCGGCg-------GUGUCCa--GCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 53521 0.68 0.244539
Target:  5'- -aUCCGGCuCGCgCACaAGGUCuAUCCGCc -3'
miRNA:   3'- ggGGGCCG-GCG-GUG-UCCAGcUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 18426 0.68 0.252866
Target:  5'- gCCCCGGUucaacaugaacgcggUGCCGCugccGUgacCGACCCGCu -3'
miRNA:   3'- gGGGGCCG---------------GCGGUGuc--CA---GCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 6673 0.69 0.211409
Target:  5'- gCCgCGGCgCGCCGCuGGUgUGGCUgGCa -3'
miRNA:   3'- gGGgGCCG-GCGGUGuCCA-GCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 56504 0.69 0.201255
Target:  5'- -gCCCGGCCGCaccgcaugGCAGGUaGGCgcaCCGCa -3'
miRNA:   3'- ggGGGCCGGCGg-------UGUCCAgCUG---GGCG- -5'
18777 5' -64.3 NC_004683.1 + 44663 0.69 0.200759
Target:  5'- gCCCCGGCgaaCCACGacgcgguGGUUGAUCUGCa -3'
miRNA:   3'- gGGGGCCGgc-GGUGU-------CCAGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 19223 0.76 0.067837
Target:  5'- uCCCUggUGGCCGCCGcCGGGUCGAa-CGCg -3'
miRNA:   3'- -GGGG--GCCGGCGGU-GUCCAGCUggGCG- -5'
18777 5' -64.3 NC_004683.1 + 44777 0.76 0.067837
Target:  5'- -aCCCGGCgGCgGCGGGcCGcguGCCCGCg -3'
miRNA:   3'- ggGGGCCGgCGgUGUCCaGC---UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 21157 0.75 0.077508
Target:  5'- aUCCCGGCCGCggacCACGGuGUCGGCaCCGa -3'
miRNA:   3'- gGGGGCCGGCG----GUGUC-CAGCUG-GGCg -5'
18777 5' -64.3 NC_004683.1 + 3663 0.73 0.106375
Target:  5'- -gCCCGGCCGCCGCuGGagagUGugCgGCa -3'
miRNA:   3'- ggGGGCCGGCGGUGuCCa---GCugGgCG- -5'
18777 5' -64.3 NC_004683.1 + 24592 0.71 0.160671
Target:  5'- aCCUCGGCC-UCAUGGGaggCGACCCGg -3'
miRNA:   3'- gGGGGCCGGcGGUGUCCa--GCUGGGCg -5'
18777 5' -64.3 NC_004683.1 + 18161 0.7 0.168999
Target:  5'- aCCCCGaaGCCGCCGuCAcGGUC-ACCgGCu -3'
miRNA:   3'- gGGGGC--CGGCGGU-GU-CCAGcUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 1863 0.7 0.173306
Target:  5'- gCCUCUGGCCGauucggugaCCGCAGGcaagaugcgCGACCuCGCc -3'
miRNA:   3'- -GGGGGCCGGC---------GGUGUCCa--------GCUGG-GCG- -5'
18777 5' -64.3 NC_004683.1 + 45666 0.7 0.191528
Target:  5'- -aCCCGGCCGCCGgCAcaUCGGCgCUGUg -3'
miRNA:   3'- ggGGGCCGGCGGU-GUccAGCUG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.