miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 3' -58.9 NC_004683.1 + 16966 1.1 0.000451
Target:  5'- gCACGACACCAGCGGCGAGUCCUCGCCc -3'
miRNA:   3'- -GUGCUGUGGUCGCCGCUCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 20428 0.8 0.074704
Target:  5'- gGCGGCACCGGCGGUGcAGgggCCaccgCGCCg -3'
miRNA:   3'- gUGCUGUGGUCGCCGC-UCa--GGa---GCGG- -5'
18779 3' -58.9 NC_004683.1 + 23720 0.79 0.081194
Target:  5'- gGCGGCACCGGCGGCGGcaCCaccccggCGCCg -3'
miRNA:   3'- gUGCUGUGGUCGCCGCUcaGGa------GCGG- -5'
18779 3' -58.9 NC_004683.1 + 4378 0.75 0.160143
Target:  5'- --aGACGCCAGCGacgaCGAGUCCcaCGCCg -3'
miRNA:   3'- gugCUGUGGUCGCc---GCUCAGGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 24508 0.75 0.164433
Target:  5'- --gGugGCCGGCGGCuuGGUCC-CGCCg -3'
miRNA:   3'- gugCugUGGUCGCCGc-UCAGGaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 20542 0.74 0.182645
Target:  5'- gGCGGCACCGGCggcaacGGCGGGuuUCCUgGCg -3'
miRNA:   3'- gUGCUGUGGUCG------CCGCUC--AGGAgCGg -5'
18779 3' -58.9 NC_004683.1 + 39577 0.74 0.187469
Target:  5'- aCGCGACGCCucGCGGCGuuagaUCGCCg -3'
miRNA:   3'- -GUGCUGUGGu-CGCCGCucaggAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 19263 0.73 0.2079
Target:  5'- aGCuGAUGCCcuacaAG-GGUGAGUCCUCGCCu -3'
miRNA:   3'- gUG-CUGUGG-----UCgCCGCUCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 19268 0.73 0.218819
Target:  5'- aCAuCGGCGCCGGCcuugaGCGcccAGUCCUUGCCc -3'
miRNA:   3'- -GU-GCUGUGGUCGc----CGC---UCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 4942 0.73 0.221061
Target:  5'- aGCGGCgGCCAGCGGCGcauGcgcgucgaggccgguUCCUCGCa -3'
miRNA:   3'- gUGCUG-UGGUCGCCGCu--C---------------AGGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 25105 0.73 0.230225
Target:  5'- uCugGcCAacCCGGCGGCGuugccGGUCCUgGCCg -3'
miRNA:   3'- -GugCuGU--GGUCGCCGC-----UCAGGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 46789 0.73 0.230225
Target:  5'- uCGCGGaguuGCgCGGCGGCGGGUCCaagcacCGCCc -3'
miRNA:   3'- -GUGCUg---UG-GUCGCCGCUCAGGa-----GCGG- -5'
18779 3' -58.9 NC_004683.1 + 51057 0.72 0.236114
Target:  5'- -uCGGCGCCuuGGCGGCGGGUgCg-GCCg -3'
miRNA:   3'- guGCUGUGG--UCGCCGCUCAgGagCGG- -5'
18779 3' -58.9 NC_004683.1 + 29134 0.71 0.267469
Target:  5'- cCACGGCGCCAGCGucuccCGAaGUCCccacaUCGCUc -3'
miRNA:   3'- -GUGCUGUGGUCGCc----GCU-CAGG-----AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 44772 0.71 0.274131
Target:  5'- cUACGAC-CCGGCGGCGGcGggCCgcgUGCCc -3'
miRNA:   3'- -GUGCUGuGGUCGCCGCU-Ca-GGa--GCGG- -5'
18779 3' -58.9 NC_004683.1 + 47202 0.71 0.274131
Target:  5'- aCGCGGucacccCACCGGcCGcGCGAGaCCUCGUCg -3'
miRNA:   3'- -GUGCU------GUGGUC-GC-CGCUCaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 43896 0.71 0.28785
Target:  5'- cCGCGACAcCCGGCGcGCGuGGUCgagUGCCa -3'
miRNA:   3'- -GUGCUGU-GGUCGC-CGC-UCAGga-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 51481 0.71 0.29491
Target:  5'- cCGCGACACguGCGGUGucGcCCUgGCUc -3'
miRNA:   3'- -GUGCUGUGguCGCCGCu-CaGGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 24434 0.71 0.29491
Target:  5'- cCGCGugGCCuGCGGCGAcgaGUCggcguugcauCUCGCg -3'
miRNA:   3'- -GUGCugUGGuCGCCGCU---CAG----------GAGCGg -5'
18779 3' -58.9 NC_004683.1 + 24242 0.71 0.299932
Target:  5'- gCACuGGCAgCGGUGGgcccgcgccuacgcCGAGUCCUaCGCCg -3'
miRNA:   3'- -GUG-CUGUgGUCGCC--------------GCUCAGGA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.