miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 3' -58.9 NC_004683.1 + 239 0.67 0.513328
Target:  5'- cCGCGAUGCCGccgcugcugcccGCGGCGGGgCUggUCGCg -3'
miRNA:   3'- -GUGCUGUGGU------------CGCCGCUCaGG--AGCGg -5'
18779 3' -58.9 NC_004683.1 + 374 0.66 0.523506
Target:  5'- -uCGACACCGGU-GCGGG-CCUgGCg -3'
miRNA:   3'- guGCUGUGGUCGcCGCUCaGGAgCGg -5'
18779 3' -58.9 NC_004683.1 + 457 0.66 0.564924
Target:  5'- aGCGACGCCAGgcccgcacCGGUGucgacugucgaGGUCUccagccgcaUCGCCa -3'
miRNA:   3'- gUGCUGUGGUC--------GCCGC-----------UCAGG---------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 1096 0.67 0.513328
Target:  5'- gCGCGugGCgCAGC-GCGAaccCCUCGUCg -3'
miRNA:   3'- -GUGCugUG-GUCGcCGCUca-GGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 1392 0.66 0.544087
Target:  5'- gCACGACaaGCCGGCGauCGAGgacgCCcCGCUg -3'
miRNA:   3'- -GUGCUG--UGGUCGCc-GCUCa---GGaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 1488 0.7 0.348096
Target:  5'- -uCGAgAUCAGCGGgGcGUCCucgaUCGCCg -3'
miRNA:   3'- guGCUgUGGUCGCCgCuCAGG----AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 1581 0.66 0.544087
Target:  5'- gGCGGC-CC-GCGGCGGcaaCgUCGCCa -3'
miRNA:   3'- gUGCUGuGGuCGCCGCUca-GgAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 2143 0.66 0.548235
Target:  5'- gGCGugGCCGuGCuGGCGGG-CCUgggguggucccugauUGCCg -3'
miRNA:   3'- gUGCugUGGU-CG-CCGCUCaGGA---------------GCGG- -5'
18779 3' -58.9 NC_004683.1 + 2284 0.66 0.564924
Target:  5'- aCACGGCACgCGGCacaGGCG-GUCgCg-GCCa -3'
miRNA:   3'- -GUGCUGUG-GUCG---CCGCuCAG-GagCGG- -5'
18779 3' -58.9 NC_004683.1 + 2750 0.66 0.523506
Target:  5'- gCGCGGCgGCC-GCGGCGAG--CUCGgCg -3'
miRNA:   3'- -GUGCUG-UGGuCGCCGCUCagGAGCgG- -5'
18779 3' -58.9 NC_004683.1 + 3153 0.67 0.503231
Target:  5'- -uCGACGCCGGCGuGCuugcuGUugaCCUCGUCg -3'
miRNA:   3'- guGCUGUGGUCGC-CGcu---CA---GGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 3896 0.68 0.416824
Target:  5'- uCAUcGCGCCAGgGGCGAucUUCUCGCg -3'
miRNA:   3'- -GUGcUGUGGUCgCCGCUc-AGGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 4378 0.75 0.160143
Target:  5'- --aGACGCCAGCGacgaCGAGUCCcaCGCCg -3'
miRNA:   3'- gugCUGUGGUCGCc---GCUCAGGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 4942 0.73 0.221061
Target:  5'- aGCGGCgGCCAGCGGCGcauGcgcgucgaggccgguUCCUCGCa -3'
miRNA:   3'- gUGCUG-UGGUCGCCGCu--C---------------AGGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 5467 0.68 0.416824
Target:  5'- -uCGcCACCGGCgauguguggcacGGCGuGUCCUCGgCg -3'
miRNA:   3'- guGCuGUGGUCG------------CCGCuCAGGAGCgG- -5'
18779 3' -58.9 NC_004683.1 + 5912 0.7 0.324495
Target:  5'- gGCGGCgguGCCGcGCGGCGAGcUgCUCGUa -3'
miRNA:   3'- gUGCUG---UGGU-CGCCGCUC-AgGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 5935 0.67 0.473485
Target:  5'- cCACGAuCGgCAaCGGCGAGcCCUC-CCa -3'
miRNA:   3'- -GUGCU-GUgGUcGCCGCUCaGGAGcGG- -5'
18779 3' -58.9 NC_004683.1 + 6405 0.67 0.463766
Target:  5'- aGCGACACC-GCGGUcaaGGGUCg-CGCg -3'
miRNA:   3'- gUGCUGUGGuCGCCG---CUCAGgaGCGg -5'
18779 3' -58.9 NC_004683.1 + 6463 0.68 0.407788
Target:  5'- aGCGucgucGCGCCAGCGuCGAGgacgCCagCGCCg -3'
miRNA:   3'- gUGC-----UGUGGUCGCcGCUCa---GGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 6762 0.7 0.348096
Target:  5'- aCACGugccagccACACCAGCGGCGcG-CCgcgGCCa -3'
miRNA:   3'- -GUGC--------UGUGGUCGCCGCuCaGGag-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.