miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 3' -58.9 NC_004683.1 + 5467 0.68 0.416824
Target:  5'- -uCGcCACCGGCgauguguggcacGGCGuGUCCUCGgCg -3'
miRNA:   3'- guGCuGUGGUCG------------CCGCuCAGGAGCgG- -5'
18779 3' -58.9 NC_004683.1 + 48255 0.71 0.302105
Target:  5'- aGCGACGCCGcCGGCGAGUggCUgCGCa -3'
miRNA:   3'- gUGCUGUGGUcGCCGCUCA--GGaGCGg -5'
18779 3' -58.9 NC_004683.1 + 48035 0.7 0.324495
Target:  5'- -gUGGCGCCGGCccaGGCGGaUCUUCGUCa -3'
miRNA:   3'- guGCUGUGGUCG---CCGCUcAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 44270 0.7 0.332228
Target:  5'- gACGACGCgGcucgacGCGGCGA-UCCgCGCCg -3'
miRNA:   3'- gUGCUGUGgU------CGCCGCUcAGGaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 53580 0.7 0.332228
Target:  5'- gGCaGACGCCGGCcgcaccgccGGcCGcGUCUUCGCCg -3'
miRNA:   3'- gUG-CUGUGGUCG---------CC-GCuCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 42292 0.69 0.370365
Target:  5'- uCAUGACGCgGGCGcuguggaucgcggcGUGGGUgUUCGCCg -3'
miRNA:   3'- -GUGCUGUGgUCGC--------------CGCUCAgGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 40518 0.69 0.381429
Target:  5'- gCACGGCGCCccccuCGGCGGG-CCacucgaUCGCCc -3'
miRNA:   3'- -GUGCUGUGGuc---GCCGCUCaGG------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 52006 0.68 0.407788
Target:  5'- -uCGACACCAucaccgaaaucuGCGGCGu-UCCcgCGCCg -3'
miRNA:   3'- guGCUGUGGU------------CGCCGCucAGGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 6463 0.68 0.407788
Target:  5'- aGCGucgucGCGCCAGCGuCGAGgacgCCagCGCCg -3'
miRNA:   3'- gUGC-----UGUGGUCGCcGCUCa---GGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 24242 0.71 0.299932
Target:  5'- gCACuGGCAgCGGUGGgcccgcgccuacgcCGAGUCCUaCGCCg -3'
miRNA:   3'- -GUG-CUGUgGUCGCC--------------GCUCAGGA-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 43896 0.71 0.28785
Target:  5'- cCGCGACAcCCGGCGcGCGuGGUCgagUGCCa -3'
miRNA:   3'- -GUGCUGU-GGUCGC-CGC-UCAGga-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 47202 0.71 0.274131
Target:  5'- aCGCGGucacccCACCGGcCGcGCGAGaCCUCGUCg -3'
miRNA:   3'- -GUGCU------GUGGUC-GC-CGCUCaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 23720 0.79 0.081194
Target:  5'- gGCGGCACCGGCGGCGGcaCCaccccggCGCCg -3'
miRNA:   3'- gUGCUGUGGUCGCCGCUcaGGa------GCGG- -5'
18779 3' -58.9 NC_004683.1 + 4378 0.75 0.160143
Target:  5'- --aGACGCCAGCGacgaCGAGUCCcaCGCCg -3'
miRNA:   3'- gugCUGUGGUCGCc---GCUCAGGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 20542 0.74 0.182645
Target:  5'- gGCGGCACCGGCggcaacGGCGGGuuUCCUgGCg -3'
miRNA:   3'- gUGCUGUGGUCG------CCGCUC--AGGAgCGg -5'
18779 3' -58.9 NC_004683.1 + 19263 0.73 0.2079
Target:  5'- aGCuGAUGCCcuacaAG-GGUGAGUCCUCGCCu -3'
miRNA:   3'- gUG-CUGUGG-----UCgCCGCUCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 4942 0.73 0.221061
Target:  5'- aGCGGCgGCCAGCGGCGcauGcgcgucgaggccgguUCCUCGCa -3'
miRNA:   3'- gUGCUG-UGGUCGCCGCu--C---------------AGGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 25105 0.73 0.230225
Target:  5'- uCugGcCAacCCGGCGGCGuugccGGUCCUgGCCg -3'
miRNA:   3'- -GugCuGU--GGUCGCCGC-----UCAGGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 46789 0.73 0.230225
Target:  5'- uCGCGGaguuGCgCGGCGGCGGGUCCaagcacCGCCc -3'
miRNA:   3'- -GUGCUg---UG-GUCGCCGCUCAGGa-----GCGG- -5'
18779 3' -58.9 NC_004683.1 + 44772 0.71 0.274131
Target:  5'- cUACGAC-CCGGCGGCGGcGggCCgcgUGCCc -3'
miRNA:   3'- -GUGCUGuGGUCGCCGCU-Ca-GGa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.