Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 40867 | 0.66 | 0.855832 |
Target: 5'- cCGuCGGCGAgCGCGU-CGGUcgcggCGGUc -3' miRNA: 3'- cGCuGCUGCUaGCGCAuGCCAa----GCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 39880 | 0.66 | 0.847471 |
Target: 5'- -aGACGGCGGaUGCGcUGCGGgUUGGc -3' miRNA: 3'- cgCUGCUGCUaGCGC-AUGCCaAGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 54678 | 0.66 | 0.847471 |
Target: 5'- uCGGCGACG-UCGCGccgauUACGGgu-GGUg -3' miRNA: 3'- cGCUGCUGCuAGCGC-----AUGCCaagCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 47304 | 0.66 | 0.838891 |
Target: 5'- gGCGACGAcaccgaCGAggucucgCGCGgcCGGUggGGUg -3' miRNA: 3'- -CGCUGCU------GCUa------GCGCauGCCAagCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 442 | 0.66 | 0.821103 |
Target: 5'- gGCG-CGGCGGUCGag-GCGGaucCGGUg -3' miRNA: 3'- -CGCuGCUGCUAGCgcaUGCCaa-GCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 2447 | 0.67 | 0.811913 |
Target: 5'- uGCGACGcagGCGuAUCagGCGaACGGUcCGGUg -3' miRNA: 3'- -CGCUGC---UGC-UAG--CGCaUGCCAaGCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 42581 | 0.67 | 0.811913 |
Target: 5'- cGCGccGCGGCGGUCGgGgcCGGUcgucCGGc -3' miRNA: 3'- -CGC--UGCUGCUAGCgCauGCCAa---GCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 13326 | 0.67 | 0.811913 |
Target: 5'- gGCGACGcCGAU-GCGgucgACGGguacaCGGUg -3' miRNA: 3'- -CGCUGCuGCUAgCGCa---UGCCaa---GCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 8628 | 0.67 | 0.810984 |
Target: 5'- cGCcACGGCGAUCagGCcgGUGCGGUggccgcccugcagUCGGUu -3' miRNA: 3'- -CGcUGCUGCUAG--CG--CAUGCCA-------------AGCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 6971 | 0.67 | 0.80254 |
Target: 5'- cGUGACGACGAUCGCGccgucGCGcgccGUccagCGGc -3' miRNA: 3'- -CGCUGCUGCUAGCGCa----UGC----CAa---GCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 52144 | 0.67 | 0.80254 |
Target: 5'- cGCGuCGACGAUcagccagggCGCGU-CGGgcaCGGUu -3' miRNA: 3'- -CGCuGCUGCUA---------GCGCAuGCCaa-GCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 310 | 0.67 | 0.80254 |
Target: 5'- aGCGGCGGC-AUCGCGgcgcuCGGagUGGg -3' miRNA: 3'- -CGCUGCUGcUAGCGCau---GCCaaGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 18253 | 0.67 | 0.792993 |
Target: 5'- gGCGACGAgcCGGUgacCGUGacgGCGGcUUCGGg -3' miRNA: 3'- -CGCUGCU--GCUA---GCGCa--UGCC-AAGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 47583 | 0.67 | 0.783283 |
Target: 5'- uGCGACGGC---UGCGUgGCGGcgUUCGGg -3' miRNA: 3'- -CGCUGCUGcuaGCGCA-UGCC--AAGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 20918 | 0.67 | 0.773419 |
Target: 5'- cGUGugGGCGAUCGaCGgagACG--UCGGa -3' miRNA: 3'- -CGCugCUGCUAGC-GCa--UGCcaAGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 31322 | 0.68 | 0.763414 |
Target: 5'- gGUGGCGGCGAugUCGCcGUgAUGGgugaagUCGGg -3' miRNA: 3'- -CGCUGCUGCU--AGCG-CA-UGCCa-----AGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 45297 | 0.68 | 0.73161 |
Target: 5'- gGCGcUGACGAUCucggcgaGCGcGCGGUcgaaUCGGUg -3' miRNA: 3'- -CGCuGCUGCUAG-------CGCaUGCCA----AGCCA- -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 54735 | 0.68 | 0.722187 |
Target: 5'- uCGACGAUGA-CGaUGUugGcGUUCGGg -3' miRNA: 3'- cGCUGCUGCUaGC-GCAugC-CAAGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 24424 | 0.68 | 0.711635 |
Target: 5'- uGCGGCGACGAgUCGgCGUugcaucucGCGGgugaacUCGGc -3' miRNA: 3'- -CGCUGCUGCU-AGC-GCA--------UGCCa-----AGCCa -5' |
|||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 21568 | 0.69 | 0.701007 |
Target: 5'- gGCGGCGGCGGUgGCGggcGCGGcaugaucaccaUCGGc -3' miRNA: 3'- -CGCUGCUGCUAgCGCa--UGCCa----------AGCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home