Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 56383 | 0.71 | 0.560605 |
Target: 5'- gGCGACGGCGugcaGUGUGCGGggCGc- -3' miRNA: 3'- -CGCUGCUGCuag-CGCAUGCCaaGCca -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 55254 | 0.73 | 0.47758 |
Target: 5'- gGCGGCGACGGcuUUGCGUucuuCGGUggGGa -3' miRNA: 3'- -CGCUGCUGCU--AGCGCAu---GCCAagCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 54735 | 0.68 | 0.722187 |
Target: 5'- uCGACGAUGA-CGaUGUugGcGUUCGGg -3' miRNA: 3'- cGCUGCUGCUaGC-GCAugC-CAAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 54678 | 0.66 | 0.847471 |
Target: 5'- uCGGCGACG-UCGCGccgauUACGGgu-GGUg -3' miRNA: 3'- cGCUGCUGCuAGCGC-----AUGCCaagCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 54353 | 0.77 | 0.266745 |
Target: 5'- aGUGA-GGCGAaCGCGggGCGGUUCGGUg -3' miRNA: 3'- -CGCUgCUGCUaGCGCa-UGCCAAGCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 53677 | 0.7 | 0.614509 |
Target: 5'- uCGGCGGCGAagaCGCGgccgGCGGUgCGGc -3' miRNA: 3'- cGCUGCUGCUa--GCGCa---UGCCAaGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 52144 | 0.67 | 0.80254 |
Target: 5'- cGCGuCGACGAUcagccagggCGCGU-CGGgcaCGGUu -3' miRNA: 3'- -CGCuGCUGCUA---------GCGCAuGCCaa-GCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 51584 | 0.69 | 0.701007 |
Target: 5'- cCGAUGcCGAUCGC--GCGGU-CGGUg -3' miRNA: 3'- cGCUGCuGCUAGCGcaUGCCAaGCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 49073 | 0.73 | 0.438378 |
Target: 5'- gGCGGCGG-GAUCGCG-GCGGgcccgCGGUa -3' miRNA: 3'- -CGCUGCUgCUAGCGCaUGCCaa---GCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 47667 | 0.7 | 0.625369 |
Target: 5'- cGCGACGACGGU-GUGUGCcuGGcguaUCGGg -3' miRNA: 3'- -CGCUGCUGCUAgCGCAUG--CCa---AGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 47583 | 0.67 | 0.783283 |
Target: 5'- uGCGACGGC---UGCGUgGCGGcgUUCGGg -3' miRNA: 3'- -CGCUGCUGcuaGCGCA-UGCC--AAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 47304 | 0.66 | 0.838891 |
Target: 5'- gGCGACGAcaccgaCGAggucucgCGCGgcCGGUggGGUg -3' miRNA: 3'- -CGCUGCU------GCUa------GCGCauGCCAagCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 45573 | 0.72 | 0.48765 |
Target: 5'- gGCGACGAgcCGGUCG-GUGCGGggCGcGUc -3' miRNA: 3'- -CGCUGCU--GCUAGCgCAUGCCaaGC-CA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 45297 | 0.68 | 0.73161 |
Target: 5'- gGCGcUGACGAUCucggcgaGCGcGCGGUcgaaUCGGUg -3' miRNA: 3'- -CGCuGCUGCUAG-------CGCaUGCCA----AGCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 44490 | 0.7 | 0.647098 |
Target: 5'- cGCGACGAcuuCGGUgGCGUaucgaccucguGCGGcUCGGc -3' miRNA: 3'- -CGCUGCU---GCUAgCGCA-----------UGCCaAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 43591 | 0.71 | 0.53938 |
Target: 5'- gGUGACGACG-UCGCcgACGGUcugCGGUc -3' miRNA: 3'- -CGCUGCUGCuAGCGcaUGCCAa--GCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 42629 | 0.7 | 0.647098 |
Target: 5'- cGCGACGACGccCGCG-ACGaGaUCGGc -3' miRNA: 3'- -CGCUGCUGCuaGCGCaUGC-CaAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 42581 | 0.67 | 0.811913 |
Target: 5'- cGCGccGCGGCGGUCGgGgcCGGUcgucCGGc -3' miRNA: 3'- -CGC--UGCUGCUAGCgCauGCCAa---GCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 42314 | 0.69 | 0.668773 |
Target: 5'- cGCGGCGugGGuguucgccgugaUCGCGUG-GGUUgGGc -3' miRNA: 3'- -CGCUGCugCU------------AGCGCAUgCCAAgCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 41054 | 0.7 | 0.636235 |
Target: 5'- aGCGGCGAUGcgCGCGgccaGGU-CGGc -3' miRNA: 3'- -CGCUGCUGCuaGCGCaug-CCAaGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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