miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18780 5' -57.8 NC_004683.1 + 16067 0.66 0.583188
Target:  5'- cGGGUCGGUGcccgaugccucCAUGAGGUCGgCGCc -3'
miRNA:   3'- aUCUAGUCGCu----------GUACUCCGGCgGCGc -5'
18780 5' -57.8 NC_004683.1 + 49436 0.66 0.583188
Target:  5'- cAGGUgCAGgGGCAcc-GGCCGUCGUGg -3'
miRNA:   3'- aUCUA-GUCgCUGUacuCCGGCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 16447 0.66 0.572397
Target:  5'- gGGAuUCAGCGACAacgcguuguUGAGGaacucguugaUGCCGCc -3'
miRNA:   3'- aUCU-AGUCGCUGU---------ACUCCg---------GCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 9824 0.66 0.569168
Target:  5'- aGGAUCGGCGccgagcCGacucgaaaaguucuUGAGGCgGUCGCGc -3'
miRNA:   3'- aUCUAGUCGCu-----GU--------------ACUCCGgCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 44761 0.66 0.569168
Target:  5'- gAGAUCcaaaccuacgacccGGCGGCGgcGGGCCGCgugccCGCGa -3'
miRNA:   3'- aUCUAG--------------UCGCUGUacUCCGGCG-----GCGC- -5'
18780 5' -57.8 NC_004683.1 + 1662 0.66 0.550966
Target:  5'- -----uGGCGACGUu--GCCGCCGCGg -3'
miRNA:   3'- aucuagUCGCUGUAcucCGGCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 12147 0.66 0.540342
Target:  5'- cAGGUgGGCGGCAggggguggcggGGGGCCaGCCuccgGCGg -3'
miRNA:   3'- aUCUAgUCGCUGUa----------CUCCGG-CGG----CGC- -5'
18780 5' -57.8 NC_004683.1 + 3969 0.66 0.540342
Target:  5'- gGGAUCgAGcCGAuCAUGGgguGGCgGCCGUGg -3'
miRNA:   3'- aUCUAG-UC-GCU-GUACU---CCGgCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 11691 0.66 0.529787
Target:  5'- cGGAUgaAGCGACggGAGcGCUGCaGCGg -3'
miRNA:   3'- aUCUAg-UCGCUGuaCUC-CGGCGgCGC- -5'
18780 5' -57.8 NC_004683.1 + 39809 0.66 0.529787
Target:  5'- aAGAUCAGCG-CGUuucuucgccgucGAuuGGCUGCCGUa -3'
miRNA:   3'- aUCUAGUCGCuGUA------------CU--CCGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 26230 0.67 0.519309
Target:  5'- aGGAUCAGCGAgA-----CCGCCGCGc -3'
miRNA:   3'- aUCUAGUCGCUgUacuccGGCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 41169 0.67 0.516181
Target:  5'- -uGG-CAGCGGCGcGGGGCCGCUuacuacguggugauGCGa -3'
miRNA:   3'- auCUaGUCGCUGUaCUCCGGCGG--------------CGC- -5'
18780 5' -57.8 NC_004683.1 + 40204 0.67 0.508913
Target:  5'- cAGAUUGGCGAUG-GucGCgGCCGCGu -3'
miRNA:   3'- aUCUAGUCGCUGUaCucCGgCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 1738 0.67 0.488394
Target:  5'- gAGGUCGGCGAC--GAGGUgacaaaCGgCGCGg -3'
miRNA:   3'- aUCUAGUCGCUGuaCUCCG------GCgGCGC- -5'
18780 5' -57.8 NC_004683.1 + 3734 0.67 0.488394
Target:  5'- ----cCAGCGGCGgccGGGCCGCaCGCu -3'
miRNA:   3'- aucuaGUCGCUGUac-UCCGGCG-GCGc -5'
18780 5' -57.8 NC_004683.1 + 9401 0.67 0.478281
Target:  5'- ---uUCGGCccgggGAGGCCGCCGCc -3'
miRNA:   3'- aucuAGUCGcuguaCUCCGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 56993 0.68 0.458371
Target:  5'- cAGGUCAGaGGCucgcgGGGuGCCGCUGCa -3'
miRNA:   3'- aUCUAGUCgCUGua---CUC-CGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 25571 0.68 0.448584
Target:  5'- -cGGUCGGCaacGGCAcGGcGGCCGUCGCa -3'
miRNA:   3'- auCUAGUCG---CUGUaCU-CCGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 5154 0.68 0.429362
Target:  5'- cAGGgcgcCAGCGACAacgUGcGcGCCGCCGCc -3'
miRNA:   3'- aUCUa---GUCGCUGU---ACuC-CGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 52238 0.69 0.392422
Target:  5'- ---cUCGGCGACccG-GGCCGgCGCGg -3'
miRNA:   3'- aucuAGUCGCUGuaCuCCGGCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.