miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18784 3' -61.9 NC_004683.1 + 18430 1.1 0.000241
Target:  5'- aCCGUCGCGGCCUCACCGGCUGCCACAu -3'
miRNA:   3'- -GGCAGCGCCGGAGUGGCCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 46675 0.77 0.070564
Target:  5'- gCCGUCGCGGcCCUCgACCGGCaccagcaGCgGCAg -3'
miRNA:   3'- -GGCAGCGCC-GGAG-UGGCCGa------CGgUGU- -5'
18784 3' -61.9 NC_004683.1 + 23712 0.76 0.083131
Target:  5'- uCCGcCGCGGCggCACCGGCgGCgGCAc -3'
miRNA:   3'- -GGCaGCGCCGgaGUGGCCGaCGgUGU- -5'
18784 3' -61.9 NC_004683.1 + 4111 0.76 0.087776
Target:  5'- gCCGUCGaUGGCCUUACCGGCgaugGCguCu -3'
miRNA:   3'- -GGCAGC-GCCGGAGUGGCCGa---CGguGu -5'
18784 3' -61.9 NC_004683.1 + 35250 0.74 0.120908
Target:  5'- cUCGUUagcgcuaGCGGCCUCACCGGCggauUCGCAg -3'
miRNA:   3'- -GGCAG-------CGCCGGAGUGGCCGac--GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 41085 0.74 0.1245
Target:  5'- aCGUaguaaGCGGCCccgCGCC-GCUGCCACGg -3'
miRNA:   3'- gGCAg----CGCCGGa--GUGGcCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 18238 0.73 0.131286
Target:  5'- aCCGUgacgGCGGCUUCGggguCCGGCcGCCACGg -3'
miRNA:   3'- -GGCAg---CGCCGGAGU----GGCCGaCGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 20132 0.71 0.183813
Target:  5'- cUCGUCG-GGCCcaaccgcgccguaUCACCGGUcugGCCGCGa -3'
miRNA:   3'- -GGCAGCgCCGG-------------AGUGGCCGa--CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 20413 0.71 0.184285
Target:  5'- cCCGggGCGGCCaacggcggCACCGGCggugcagggGCCACc -3'
miRNA:   3'- -GGCagCGCCGGa-------GUGGCCGa--------CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 52284 0.7 0.214617
Target:  5'- aCCGaCGaCGGCCUCAUCGaGCgugucgaGCCACc -3'
miRNA:   3'- -GGCaGC-GCCGGAGUGGC-CGa------CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 20173 0.7 0.219521
Target:  5'- aUCGggccCGCGGCCUCaacaccaggaacgACCGGCgggGUCACc -3'
miRNA:   3'- -GGCa---GCGCCGGAG-------------UGGCCGa--CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 48101 0.7 0.220071
Target:  5'- gCCGgCGCcaCCUCAUCGGCUGCaGCAg -3'
miRNA:   3'- -GGCaGCGccGGAGUGGCCGACGgUGU- -5'
18784 3' -61.9 NC_004683.1 + 47509 0.7 0.225643
Target:  5'- uUCGUCcCGGCCUUGC--GCUGCCGCGc -3'
miRNA:   3'- -GGCAGcGCCGGAGUGgcCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 20032 0.7 0.237145
Target:  5'- -gGUCGCGGCCagACCGGUgauacGgCGCGg -3'
miRNA:   3'- ggCAGCGCCGGagUGGCCGa----CgGUGU- -5'
18784 3' -61.9 NC_004683.1 + 32790 0.69 0.243079
Target:  5'- -aGUCGCGGgCCa-GCCGGCgcgagcUGCCACu -3'
miRNA:   3'- ggCAGCGCC-GGagUGGCCG------ACGGUGu -5'
18784 3' -61.9 NC_004683.1 + 53573 0.69 0.249134
Target:  5'- aCGcCGCGGCagaCGCCGGCcgcaccgccgGCCGCGu -3'
miRNA:   3'- gGCaGCGCCGga-GUGGCCGa---------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 3290 0.69 0.249135
Target:  5'- aCGg-GgGGUa-CACCGGCUGCCGCGg -3'
miRNA:   3'- gGCagCgCCGgaGUGGCCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 49419 0.69 0.255315
Target:  5'- gCCGUCGUGGU---GCgGGCaGCCGCAc -3'
miRNA:   3'- -GGCAGCGCCGgagUGgCCGaCGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 24786 0.69 0.255315
Target:  5'- gCGUUGCGGUCgCGgCGGCgcgcgGCCAUg -3'
miRNA:   3'- gGCAGCGCCGGaGUgGCCGa----CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 40192 0.69 0.26162
Target:  5'- -gGUCGCGGCCgCGuCCGGCUgGUCuguCAa -3'
miRNA:   3'- ggCAGCGCCGGaGU-GGCCGA-CGGu--GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.