miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18784 3' -61.9 NC_004683.1 + 24357 0.66 0.378321
Target:  5'- cUCGUCGCcgcaGGCCacgcggucgcgaUCACCGGUgucuucgacgagGCCACc -3'
miRNA:   3'- -GGCAGCG----CCGG------------AGUGGCCGa-----------CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 18115 0.67 0.339451
Target:  5'- aCGaUCGCGGUCgcCGCCGGCaccuaCCGCAc -3'
miRNA:   3'- gGC-AGCGCCGGa-GUGGCCGac---GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 49283 0.67 0.346513
Target:  5'- aCGUCGCGGCacacguggaggaaCUgACCcguGGCUGaCCGCc -3'
miRNA:   3'- gGCAGCGCCG-------------GAgUGG---CCGAC-GGUGu -5'
18784 3' -61.9 NC_004683.1 + 26149 0.67 0.362583
Target:  5'- gCCGgCGCGGCggucucgcugaucCUCgcgaucaugaACCGGC-GCCACAc -3'
miRNA:   3'- -GGCaGCGCCG-------------GAG----------UGGCCGaCGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 12625 0.67 0.3634
Target:  5'- uUCGUCGCcaGCCUgGCCgcGGC-GCCGCu -3'
miRNA:   3'- -GGCAGCGc-CGGAgUGG--CCGaCGGUGu -5'
18784 3' -61.9 NC_004683.1 + 42590 0.67 0.370809
Target:  5'- gCgGUCGgGGCCggUCGuCCGGCUGggguggucggcgaCCGCGa -3'
miRNA:   3'- -GgCAGCgCCGG--AGU-GGCCGAC-------------GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 54933 0.67 0.371639
Target:  5'- aCgGUCGCcacuucGCuCUCACCGGCgcccgcgGCUGCAu -3'
miRNA:   3'- -GgCAGCGc-----CG-GAGUGGCCGa------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 24888 0.67 0.371639
Target:  5'- aCCGgcaUCGCccgcaagacccGGCCgCugUGGCUGCUGCGg -3'
miRNA:   3'- -GGC---AGCG-----------CCGGaGugGCCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 39939 0.67 0.374969
Target:  5'- -aGUUGCGGUgggugcagguuggcgCUCGCCGGCUGgugacUCGCGu -3'
miRNA:   3'- ggCAGCGCCG---------------GAGUGGCCGAC-----GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 1984 0.67 0.331726
Target:  5'- gCCGUgcaCGCGuggagacuGCCgCACCGGCUGUCGa- -3'
miRNA:   3'- -GGCA---GCGC--------CGGaGUGGCCGACGGUgu -5'
18784 3' -61.9 NC_004683.1 + 1688 0.68 0.316667
Target:  5'- aUCGcagCGCGGCCggcgCGCUG-CUGCCugAc -3'
miRNA:   3'- -GGCa--GCGCCGGa---GUGGCcGACGGugU- -5'
18784 3' -61.9 NC_004683.1 + 1573 0.68 0.309334
Target:  5'- aUCGUCccgGCGGCCcgCGgCGGCaacgucGCCACAu -3'
miRNA:   3'- -GGCAG---CGCCGGa-GUgGCCGa-----CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 41085 0.74 0.1245
Target:  5'- aCGUaguaaGCGGCCccgCGCC-GCUGCCACGg -3'
miRNA:   3'- gGCAg----CGCCGGa--GUGGcCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 20413 0.71 0.184285
Target:  5'- cCCGggGCGGCCaacggcggCACCGGCggugcagggGCCACc -3'
miRNA:   3'- -GGCagCGCCGGa-------GUGGCCGa--------CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 20173 0.7 0.219521
Target:  5'- aUCGggccCGCGGCCUCaacaccaggaacgACCGGCgggGUCACc -3'
miRNA:   3'- -GGCa---GCGCCGGAG-------------UGGCCGa--CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 20032 0.7 0.237145
Target:  5'- -gGUCGCGGCCagACCGGUgauacGgCGCGg -3'
miRNA:   3'- ggCAGCGCCGGagUGGCCGa----CgGUGU- -5'
18784 3' -61.9 NC_004683.1 + 53573 0.69 0.249134
Target:  5'- aCGcCGCGGCagaCGCCGGCcgcaccgccgGCCGCGu -3'
miRNA:   3'- gGCaGCGCCGga-GUGGCCGa---------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 10116 0.69 0.27066
Target:  5'- -gGUCGCGGCCUaCcgcgccagcaaguacGCCGGCaccCCACAc -3'
miRNA:   3'- ggCAGCGCCGGA-G---------------UGGCCGac-GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 52520 0.69 0.273949
Target:  5'- gCGaUCGCGGCCgacgaGgCGGCcaaggaaUGCCACAa -3'
miRNA:   3'- gGC-AGCGCCGGag---UgGCCG-------ACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 3322 0.68 0.288112
Target:  5'- cCCGUUGUGGCagaacCUguCCGGCUGCaucggGCAc -3'
miRNA:   3'- -GGCAGCGCCG-----GAguGGCCGACGg----UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.