miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18784 3' -61.9 NC_004683.1 + 1374 0.67 0.355288
Target:  5'- uCCGUCGacCGGCCU-GCgGGUUGgCCAUg -3'
miRNA:   3'- -GGCAGC--GCCGGAgUGgCCGAC-GGUGu -5'
18784 3' -61.9 NC_004683.1 + 1573 0.68 0.309334
Target:  5'- aUCGUCccgGCGGCCcgCGgCGGCaacgucGCCACAu -3'
miRNA:   3'- -GGCAG---CGCCGGa-GUgGCCGa-----CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 1688 0.68 0.316667
Target:  5'- aUCGcagCGCGGCCggcgCGCUG-CUGCCugAc -3'
miRNA:   3'- -GGCa--GCGCCGGa---GUGGCcGACGGugU- -5'
18784 3' -61.9 NC_004683.1 + 1745 0.66 0.423674
Target:  5'- aUCGUCGaGGCCccaacCGCaCGGCcGCCAUg -3'
miRNA:   3'- -GGCAGCgCCGGa----GUG-GCCGaCGGUGu -5'
18784 3' -61.9 NC_004683.1 + 1984 0.67 0.331726
Target:  5'- gCCGUgcaCGCGuggagacuGCCgCACCGGCUGUCGa- -3'
miRNA:   3'- -GGCA---GCGC--------CGGaGUGGCCGACGGUgu -5'
18784 3' -61.9 NC_004683.1 + 2140 0.66 0.388494
Target:  5'- gCGggCGUGGCCgUGCUGGCggGCCugGg -3'
miRNA:   3'- gGCa-GCGCCGGaGUGGCCGa-CGGugU- -5'
18784 3' -61.9 NC_004683.1 + 3290 0.69 0.249135
Target:  5'- aCGg-GgGGUa-CACCGGCUGCCGCGg -3'
miRNA:   3'- gGCagCgCCGgaGUGGCCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 3322 0.68 0.288112
Target:  5'- cCCGUUGUGGCagaacCUguCCGGCUGCaucggGCAc -3'
miRNA:   3'- -GGCAGCGCCG-----GAguGGCCGACGg----UGU- -5'
18784 3' -61.9 NC_004683.1 + 4111 0.76 0.087776
Target:  5'- gCCGUCGaUGGCCUUACCGGCgaugGCguCu -3'
miRNA:   3'- -GGCAGC-GCCGGAGUGGCCGa---CGguGu -5'
18784 3' -61.9 NC_004683.1 + 4476 0.67 0.369981
Target:  5'- -aGUCuCGGCCUCAUCGGCgugggacucgucGUCGCu -3'
miRNA:   3'- ggCAGcGCCGGAGUGGCCGa-----------CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 5071 0.68 0.316668
Target:  5'- gCGUCGCGGUCguagUCGCCacGGCcGCCcuGCGa -3'
miRNA:   3'- gGCAGCGCCGG----AGUGG--CCGaCGG--UGU- -5'
18784 3' -61.9 NC_004683.1 + 6057 0.67 0.371639
Target:  5'- uCCaUCGCcucGGCCUCacccACCGGCcgGCCcaGCAg -3'
miRNA:   3'- -GGcAGCG---CCGGAG----UGGCCGa-CGG--UGU- -5'
18784 3' -61.9 NC_004683.1 + 6956 0.67 0.339451
Target:  5'- gCCGUCGCGcGCCgucCAgCGGCcguaggGCUugGu -3'
miRNA:   3'- -GGCAGCGC-CGGa--GUgGCCGa-----CGGugU- -5'
18784 3' -61.9 NC_004683.1 + 7431 0.66 0.388495
Target:  5'- gCCGUCGUaGaccaaCUCACCguccggcuuGGCUGCCAgCAc -3'
miRNA:   3'- -GGCAGCGcCg----GAGUGG---------CCGACGGU-GU- -5'
18784 3' -61.9 NC_004683.1 + 8106 0.69 0.27461
Target:  5'- cUCGacCGCGGUgcgcaUCACCGGCUGCauccaGCAg -3'
miRNA:   3'- -GGCa-GCGCCGg----AGUGGCCGACGg----UGU- -5'
18784 3' -61.9 NC_004683.1 + 9036 0.66 0.397109
Target:  5'- uCCGU--CGGCCUCGCCgGGCaGCUcCAc -3'
miRNA:   3'- -GGCAgcGCCGGAGUGG-CCGaCGGuGU- -5'
18784 3' -61.9 NC_004683.1 + 10116 0.69 0.27066
Target:  5'- -gGUCGCGGCCUaCcgcgccagcaaguacGCCGGCaccCCACAc -3'
miRNA:   3'- ggCAGCGCCGGA-G---------------UGGCCGac-GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 10128 0.67 0.371639
Target:  5'- gCCGcCGCGGCCgaa-CGGCUcgGCgGCGu -3'
miRNA:   3'- -GGCaGCGCCGGagugGCCGA--CGgUGU- -5'
18784 3' -61.9 NC_004683.1 + 12625 0.67 0.3634
Target:  5'- uUCGUCGCcaGCCUgGCCgcGGC-GCCGCu -3'
miRNA:   3'- -GGCAGCGc-CGGAgUGG--CCGaCGGUGu -5'
18784 3' -61.9 NC_004683.1 + 12933 0.66 0.397108
Target:  5'- cCUGcUCGaCGGCCgcccCACCGGUgGCCGg- -3'
miRNA:   3'- -GGC-AGC-GCCGGa---GUGGCCGaCGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.