miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18786 5' -55.8 NC_004683.1 + 20326 1.13 0.00058
Target:  5'- cCGUUGCUGAUCGCGCCGAUACCCGGCa -3'
miRNA:   3'- -GCAACGACUAGCGCGGCUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 12233 0.83 0.068861
Target:  5'- cCGggGCggGAgcgcccggCGUGCCGAUGCCCGGCg -3'
miRNA:   3'- -GCaaCGa-CUa-------GCGCGGCUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 41274 0.79 0.127667
Target:  5'- cCG-UGCUGAUCGcCGCCGccauucugcUACCCGGCc -3'
miRNA:   3'- -GCaACGACUAGC-GCGGCu--------AUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 53702 0.79 0.146411
Target:  5'- gCGgcggGcCUGAUCGCGCCGcaGCUCGGCg -3'
miRNA:   3'- -GCaa--C-GACUAGCGCGGCuaUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 51686 0.78 0.163179
Target:  5'- ---gGCuUGAUCGCGUCGAgcucgGCCUGGCg -3'
miRNA:   3'- gcaaCG-ACUAGCGCGGCUa----UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 20617 0.77 0.1836
Target:  5'- cCGUUGCcgccggugccgccggUGAUCGUGCCgGAUugguuacccGCCCGGCc -3'
miRNA:   3'- -GCAACG---------------ACUAGCGCGG-CUA---------UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 42720 0.74 0.267442
Target:  5'- ---cGCUGAccggggcUCGCuGUCGGUAUCCGGCg -3'
miRNA:   3'- gcaaCGACU-------AGCG-CGGCUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 20438 0.74 0.268115
Target:  5'- gCGgUGCagGGgccacCGCGCCGAUGgCCGGCg -3'
miRNA:   3'- -GCaACGa-CUa----GCGCGGCUAUgGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 193 0.74 0.268115
Target:  5'- --cUGCaGGUCGCGCCGcagaACCUGGCc -3'
miRNA:   3'- gcaACGaCUAGCGCGGCua--UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 25050 0.74 0.296192
Target:  5'- aGggGCcgGAUCGUGUCGGUgGCCuCGGCg -3'
miRNA:   3'- gCaaCGa-CUAGCGCGGCUA-UGG-GCCG- -5'
18786 5' -55.8 NC_004683.1 + 24786 0.73 0.326501
Target:  5'- gCGUUGC-GGUCGCGgCGGcGCgCGGCc -3'
miRNA:   3'- -GCAACGaCUAGCGCgGCUaUGgGCCG- -5'
18786 5' -55.8 NC_004683.1 + 21911 0.73 0.334429
Target:  5'- --cUGCUGGU-GCGUCGGgcaauCCCGGCa -3'
miRNA:   3'- gcaACGACUAgCGCGGCUau---GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 265 0.72 0.349878
Target:  5'- gCGggGCUGGUCGCGaCGGUggucaaggagcugACCgCGGCc -3'
miRNA:   3'- -GCaaCGACUAGCGCgGCUA-------------UGG-GCCG- -5'
18786 5' -55.8 NC_004683.1 + 32595 0.72 0.356532
Target:  5'- aGgcgGCcGGUCuGCGCCacguccggcugcacGAUGCCCGGCa -3'
miRNA:   3'- gCaa-CGaCUAG-CGCGG--------------CUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 17963 0.72 0.384912
Target:  5'- gCGUUgaGCUGAaCGCGCUGcgGcgucCCCGGCc -3'
miRNA:   3'- -GCAA--CGACUaGCGCGGCuaU----GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 18801 0.72 0.384912
Target:  5'- gCGUUGUUGAuaaaugcgacgaUCGCGCuCGGUAgaucCUCGGCc -3'
miRNA:   3'- -GCAACGACU------------AGCGCG-GCUAU----GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 16075 0.72 0.384912
Target:  5'- uCGUUGCgcgGGUCgGUGcCCGAUGCCuccaugagguCGGCg -3'
miRNA:   3'- -GCAACGa--CUAG-CGC-GGCUAUGG----------GCCG- -5'
18786 5' -55.8 NC_004683.1 + 5795 0.71 0.400103
Target:  5'- cCGUggGCUGGUUGCccugGCCGGUGCCggucgugagggucaCGGCc -3'
miRNA:   3'- -GCAa-CGACUAGCG----CGGCUAUGG--------------GCCG- -5'
18786 5' -55.8 NC_004683.1 + 12089 0.71 0.411976
Target:  5'- ---cGCUGGccCGCGUCGAUACC-GGCu -3'
miRNA:   3'- gcaaCGACUa-GCGCGGCUAUGGgCCG- -5'
18786 5' -55.8 NC_004683.1 + 40939 0.71 0.430661
Target:  5'- ---aGCUGAcCGCGCCGccguUGCCCgucGGCc -3'
miRNA:   3'- gcaaCGACUaGCGCGGCu---AUGGG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.