miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18786 5' -55.8 NC_004683.1 + 193 0.74 0.268115
Target:  5'- --cUGCaGGUCGCGCCGcagaACCUGGCc -3'
miRNA:   3'- gcaACGaCUAGCGCGGCua--UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 242 0.66 0.713439
Target:  5'- --cUGCUGGggugUCGaCGCCGAggcgcuUGCCCcGCg -3'
miRNA:   3'- gcaACGACU----AGC-GCGGCU------AUGGGcCG- -5'
18786 5' -55.8 NC_004683.1 + 265 0.72 0.349878
Target:  5'- gCGggGCUGGUCGCGaCGGUggucaaggagcugACCgCGGCc -3'
miRNA:   3'- -GCaaCGACUAGCGCgGCUA-------------UGG-GCCG- -5'
18786 5' -55.8 NC_004683.1 + 1705 0.68 0.573232
Target:  5'- ---aGCUcuuucaugCGCGCCGGaauccaguugaUGCCCGGCa -3'
miRNA:   3'- gcaaCGAcua-----GCGCGGCU-----------AUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 2867 0.66 0.734412
Target:  5'- uGUcgUGCacuUCGCGCCGAUcccugACCCgcuGGCc -3'
miRNA:   3'- gCA--ACGacuAGCGCGGCUA-----UGGG---CCG- -5'
18786 5' -55.8 NC_004683.1 + 5351 0.66 0.731289
Target:  5'- gGUUGCgUGccaucuucgaccaggCGCGCaGGUACgCCGGCg -3'
miRNA:   3'- gCAACG-ACua-------------GCGCGgCUAUG-GGCCG- -5'
18786 5' -55.8 NC_004683.1 + 5795 0.71 0.400103
Target:  5'- cCGUggGCUGGUUGCccugGCCGGUGCCggucgugagggucaCGGCc -3'
miRNA:   3'- -GCAa-CGACUAGCG----CGGCUAUGG--------------GCCG- -5'
18786 5' -55.8 NC_004683.1 + 6536 0.68 0.605587
Target:  5'- ---cGCUGG-CGCGaCGAcGCUCGGCa -3'
miRNA:   3'- gcaaCGACUaGCGCgGCUaUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 6665 0.67 0.659832
Target:  5'- cCG-UGCUGGccgcggCGCGCCGcugguGUGgCUGGCa -3'
miRNA:   3'- -GCaACGACUa-----GCGCGGC-----UAUgGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 7154 0.66 0.692155
Target:  5'- gCGUUGgUGggCGuCGCUGAgacgggugcGCCCGGg -3'
miRNA:   3'- -GCAACgACuaGC-GCGGCUa--------UGGGCCg -5'
18786 5' -55.8 NC_004683.1 + 8881 0.7 0.456653
Target:  5'- aGUUGgacugcucgaucauCUGGUCGUcgguGUCGAUGCUCGGCc -3'
miRNA:   3'- gCAAC--------------GACUAGCG----CGGCUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 11040 0.67 0.681423
Target:  5'- gCGUUGCcgaaccgguucaUGGUCGCGCCaucGAgGCCCauucGCg -3'
miRNA:   3'- -GCAACG------------ACUAGCGCGG---CUaUGGGc---CG- -5'
18786 5' -55.8 NC_004683.1 + 11986 0.66 0.734412
Target:  5'- cCGggGCUG-UCGC-CCGAucagcUAgCCGGUa -3'
miRNA:   3'- -GCaaCGACuAGCGcGGCU-----AUgGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 12089 0.71 0.411976
Target:  5'- ---cGCUGGccCGCGUCGAUACC-GGCu -3'
miRNA:   3'- gcaaCGACUa-GCGCGGCUAUGGgCCG- -5'
18786 5' -55.8 NC_004683.1 + 12233 0.83 0.068861
Target:  5'- cCGggGCggGAgcgcccggCGUGCCGAUGCCCGGCg -3'
miRNA:   3'- -GCaaCGa-CUa-------GCGCGGCUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 13011 0.68 0.594769
Target:  5'- --cUGCcGG--GCGCCGGUGgcCCCGGCg -3'
miRNA:   3'- gcaACGaCUagCGCGGCUAU--GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 13137 0.66 0.692155
Target:  5'- ---gGCggGAcCgGUGCCGAUgACCCGGCc -3'
miRNA:   3'- gcaaCGa-CUaG-CGCGGCUA-UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 13207 0.66 0.70283
Target:  5'- ---gGCaccGGUCcCGCCGAUGCCCcuccgGGCa -3'
miRNA:   3'- gcaaCGa--CUAGcGCGGCUAUGGG-----CCG- -5'
18786 5' -55.8 NC_004683.1 + 13896 0.69 0.541297
Target:  5'- uCGagGUUGAUCGgcugGCCGGgcugcugcugGCCCGGCu -3'
miRNA:   3'- -GCaaCGACUAGCg---CGGCUa---------UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 14215 0.67 0.648994
Target:  5'- --cUGCUGGUgCGUgGCCGcgACCCGcaGCa -3'
miRNA:   3'- gcaACGACUA-GCG-CGGCuaUGGGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.