miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18786 5' -55.8 NC_004683.1 + 31148 0.67 0.638141
Target:  5'- aCGUUGCaccUGAcgUCGCcaGCUGAcAUCUGGCa -3'
miRNA:   3'- -GCAACG---ACU--AGCG--CGGCUaUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 20228 0.68 0.562531
Target:  5'- ---cGCUGG-CGCaGUCGGUGCCgGGUa -3'
miRNA:   3'- gcaaCGACUaGCG-CGGCUAUGGgCCG- -5'
18786 5' -55.8 NC_004683.1 + 30529 0.68 0.583981
Target:  5'- ---gGCUGAUgGCgGCCGuuacguucggGUGCCgGGCa -3'
miRNA:   3'- gcaaCGACUAgCG-CGGC----------UAUGGgCCG- -5'
18786 5' -55.8 NC_004683.1 + 13011 0.68 0.594769
Target:  5'- --cUGCcGG--GCGCCGGUGgcCCCGGCg -3'
miRNA:   3'- gcaACGaCUagCGCGGCUAU--GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 25266 0.68 0.604505
Target:  5'- ---aGCUGGUCGCacugcugGCCGcgcUGCCgGGCc -3'
miRNA:   3'- gcaaCGACUAGCG-------CGGCu--AUGGgCCG- -5'
18786 5' -55.8 NC_004683.1 + 28051 0.68 0.604505
Target:  5'- --cUGCUcaGAUUGCccuuucgGCCGAcaUGCCUGGCg -3'
miRNA:   3'- gcaACGA--CUAGCG-------CGGCU--AUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 45588 0.68 0.605588
Target:  5'- uCGUUGacggcCUGGUCGaCGCCGGgguggUGCCCGa- -3'
miRNA:   3'- -GCAAC-----GACUAGC-GCGGCU-----AUGGGCcg -5'
18786 5' -55.8 NC_004683.1 + 21128 0.67 0.627283
Target:  5'- --gUGCUGAUgcCGCGCUGcUGgucccgaacauCCCGGCc -3'
miRNA:   3'- gcaACGACUA--GCGCGGCuAU-----------GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 26561 0.67 0.627283
Target:  5'- ---gGCUGGUUGCGCC---GCCCuGCu -3'
miRNA:   3'- gcaaCGACUAGCGCGGcuaUGGGcCG- -5'
18786 5' -55.8 NC_004683.1 + 44284 0.68 0.562531
Target:  5'- aCGcgGC-GAUcCGCGCCGAcgaucGCCCGGg -3'
miRNA:   3'- -GCaaCGaCUA-GCGCGGCUa----UGGGCCg -5'
18786 5' -55.8 NC_004683.1 + 50361 0.69 0.541298
Target:  5'- ---aGCUGAUCGCgauggGCCGcUGCCCcgacuguggcuGGCa -3'
miRNA:   3'- gcaaCGACUAGCG-----CGGCuAUGGG-----------CCG- -5'
18786 5' -55.8 NC_004683.1 + 18247 0.69 0.509979
Target:  5'- -aUUGUcggGAUCGgcaaGgCGGUGCCCGGCg -3'
miRNA:   3'- gcAACGa--CUAGCg---CgGCUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 41274 0.79 0.127667
Target:  5'- cCG-UGCUGAUCGcCGCCGccauucugcUACCCGGCc -3'
miRNA:   3'- -GCaACGACUAGC-GCGGCu--------AUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 42720 0.74 0.267442
Target:  5'- ---cGCUGAccggggcUCGCuGUCGGUAUCCGGCg -3'
miRNA:   3'- gcaaCGACU-------AGCG-CGGCUAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 20438 0.74 0.268115
Target:  5'- gCGgUGCagGGgccacCGCGCCGAUGgCCGGCg -3'
miRNA:   3'- -GCaACGa-CUa----GCGCGGCUAUgGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 21911 0.73 0.334429
Target:  5'- --cUGCUGGU-GCGUCGGgcaauCCCGGCa -3'
miRNA:   3'- gcaACGACUAgCGCGGCUau---GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 265 0.72 0.349878
Target:  5'- gCGggGCUGGUCGCGaCGGUggucaaggagcugACCgCGGCc -3'
miRNA:   3'- -GCaaCGACUAGCGCgGCUA-------------UGG-GCCG- -5'
18786 5' -55.8 NC_004683.1 + 40939 0.71 0.430661
Target:  5'- ---aGCUGAcCGCGCCGccguUGCCCgucGGCc -3'
miRNA:   3'- gcaaCGACUaGCGCGGCu---AUGGG---CCG- -5'
18786 5' -55.8 NC_004683.1 + 50491 0.7 0.489527
Target:  5'- uCGgaGCgGAUCGCGUCGGUuucaugggacGCgCGGCu -3'
miRNA:   3'- -GCaaCGaCUAGCGCGGCUA----------UGgGCCG- -5'
18786 5' -55.8 NC_004683.1 + 43828 0.7 0.489527
Target:  5'- gCGcUGCUGAccucggcCGCGCuCGGUcucgaGCCCGGUg -3'
miRNA:   3'- -GCaACGACUa------GCGCG-GCUA-----UGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.