miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18788 5' -56.7 NC_004683.1 + 2415 0.65 0.634459
Target:  5'- -aCGGAAUUGGCGccugacacguucguGGGCCuuGCGACGc- -3'
miRNA:   3'- uaGCCUUAGUCGU--------------CCCGG--CGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 23817 0.66 0.626733
Target:  5'- gAUCGGggUCGGCgccGGGGUgGUGcCGc- -3'
miRNA:   3'- -UAGCCuuAGUCG---UCCCGgCGCuGUag -5'
18788 5' -56.7 NC_004683.1 + 5141 0.66 0.604683
Target:  5'- cAUCGaGAAgauGCAGGGCgccaGCGACAa- -3'
miRNA:   3'- -UAGC-CUUaguCGUCCCGg---CGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 2741 0.66 0.604683
Target:  5'- -aCGGAuggugcGCGGcGGCCGCGGCGa- -3'
miRNA:   3'- uaGCCUuagu--CGUC-CCGGCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 55427 0.66 0.593689
Target:  5'- -aUGGAGUCgAGCAGGGUuucaaGCaguugGACGUCg -3'
miRNA:   3'- uaGCCUUAG-UCGUCCCGg----CG-----CUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 10179 0.67 0.571807
Target:  5'- -cCGcGAccucGUUAuGCAGGGCUGCGGuCAUCu -3'
miRNA:   3'- uaGC-CU----UAGU-CGUCCCGGCGCU-GUAG- -5'
18788 5' -56.7 NC_004683.1 + 1181 0.67 0.571807
Target:  5'- cUCGGAGUCGGCGuGGCaucCGACGa- -3'
miRNA:   3'- uAGCCUUAGUCGUcCCGgc-GCUGUag -5'
18788 5' -56.7 NC_004683.1 + 20271 0.67 0.568541
Target:  5'- cGUCGGAuuccuggccUCAGCauccaaacccggccGGGGCgGCGACGg- -3'
miRNA:   3'- -UAGCCUu--------AGUCG--------------UCCCGgCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 39637 0.67 0.560937
Target:  5'- -cCGGggU-GGCgacccgAGGGCCGCuACGUCg -3'
miRNA:   3'- uaGCCuuAgUCG------UCCCGGCGcUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 46593 0.67 0.550124
Target:  5'- -cUGGugcCGGUcgAGGGCCGCGACGg- -3'
miRNA:   3'- uaGCCuuaGUCG--UCCCGGCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 8379 0.67 0.550124
Target:  5'- -aCGGuGAUCGGCcccgcgcGGGCCGCGAUc-- -3'
miRNA:   3'- uaGCC-UUAGUCGu------CCCGGCGCUGuag -5'
18788 5' -56.7 NC_004683.1 + 43417 0.67 0.539376
Target:  5'- gAUCGGAGUCAcgacGUAGGGCgguucuuucuccUGCGugAUg -3'
miRNA:   3'- -UAGCCUUAGU----CGUCCCG------------GCGCugUAg -5'
18788 5' -56.7 NC_004683.1 + 45472 0.67 0.539376
Target:  5'- gGUUGGcGGUCAGgGGuGGCCGUGACc-- -3'
miRNA:   3'- -UAGCC-UUAGUCgUC-CCGGCGCUGuag -5'
18788 5' -56.7 NC_004683.1 + 49387 0.68 0.511786
Target:  5'- aGUCGGGgcgGUCAGCcacgGGucaguuccuccacguGuGCCGCGACGUCg -3'
miRNA:   3'- -UAGCCU---UAGUCG----UC---------------C-CGGCGCUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 49527 0.68 0.507593
Target:  5'- gGUCGGAuggaacgguGUCAGCGGcGGCggaUGCGAugcCAUCu -3'
miRNA:   3'- -UAGCCU---------UAGUCGUC-CCG---GCGCU---GUAG- -5'
18788 5' -56.7 NC_004683.1 + 21211 0.68 0.497173
Target:  5'- uUCGGGAcCAGCAG---CGCGGCAUCa -3'
miRNA:   3'- uAGCCUUaGUCGUCccgGCGCUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 49572 0.68 0.48685
Target:  5'- cGUCGGAuucaccagUAGCAGuGGCCGCauccuCGUCg -3'
miRNA:   3'- -UAGCCUua------GUCGUC-CCGGCGcu---GUAG- -5'
18788 5' -56.7 NC_004683.1 + 37487 0.68 0.47663
Target:  5'- -gUGGAcgCGGUAcGGGCCGCagcccGCGUCa -3'
miRNA:   3'- uaGCCUuaGUCGU-CCCGGCGc----UGUAG- -5'
18788 5' -56.7 NC_004683.1 + 31293 0.68 0.466518
Target:  5'- -cCGGGGguugugCAGCugcGGGCCGUGGCGg- -3'
miRNA:   3'- uaGCCUUa-----GUCGu--CCCGGCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 3973 0.68 0.465513
Target:  5'- gAUCGGGAUCgAGCcgaucauGGGGUgGCGGCcgugGUCg -3'
miRNA:   3'- -UAGCCUUAG-UCG-------UCCCGgCGCUG----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.