miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18789 3' -57.3 NC_004683.1 + 14322 0.7 0.382908
Target:  5'- uACGgGCCGcUGGUGGUCGga-UGUGCg -3'
miRNA:   3'- -UGCgCGGCuACCACUAGUacgGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 53666 0.7 0.382908
Target:  5'- gACGCgGCCGgcGGUGcggccggcGUC-UGCCGCGg -3'
miRNA:   3'- -UGCG-CGGCuaCCAC--------UAGuACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 38745 0.7 0.391743
Target:  5'- cACGCGaccaCGAacaUGGUGGcCgaguucuacgagGUGCCGCGCg -3'
miRNA:   3'- -UGCGCg---GCU---ACCACUaG------------UACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 25332 0.7 0.391743
Target:  5'- uGCGaccaGCUGcgGGauguUGGUCAgcacGCCGCGCa -3'
miRNA:   3'- -UGCg---CGGCuaCC----ACUAGUa---CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 4035 0.7 0.399807
Target:  5'- uGCGCGCCGcccucgGGUGcgagcacgggGUCGaccucuucagcgaUGCUGCGCa -3'
miRNA:   3'- -UGCGCGGCua----CCAC----------UAGU-------------ACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 53498 0.7 0.400709
Target:  5'- gGCGCacaaucGCUGGUGcGuUGAUCcgGCuCGCGCa -3'
miRNA:   3'- -UGCG------CGGCUAC-C-ACUAGuaCG-GCGCG- -5'
18789 3' -57.3 NC_004683.1 + 43659 0.7 0.400709
Target:  5'- -aGUGCUGcaGGUGcUCGUGCCGCaGCu -3'
miRNA:   3'- ugCGCGGCuaCCACuAGUACGGCG-CG- -5'
18789 3' -57.3 NC_004683.1 + 48502 0.69 0.409806
Target:  5'- -aGCGgUGgcGGUgcGAUCaAUGCCGCGCc -3'
miRNA:   3'- ugCGCgGCuaCCA--CUAG-UACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 2126 0.69 0.409806
Target:  5'- uCGCcCUGGUGGUGGcgggCGUgGCCGUGCu -3'
miRNA:   3'- uGCGcGGCUACCACUa---GUA-CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 5920 0.69 0.409806
Target:  5'- -gGCGCCu-UGGcGGcgGUGCCGCGCg -3'
miRNA:   3'- ugCGCGGcuACCaCUagUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 26124 0.69 0.409806
Target:  5'- cGCGCGCCGGaacGGUG--CAUGgUGUGCa -3'
miRNA:   3'- -UGCGCGGCUa--CCACuaGUACgGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 52036 0.69 0.428378
Target:  5'- cCGCGCCGA-GGcUGGgaacCGUGCCcgacGCGCc -3'
miRNA:   3'- uGCGCGGCUaCC-ACUa---GUACGG----CGCG- -5'
18789 3' -57.3 NC_004683.1 + 24052 0.69 0.428378
Target:  5'- uCGCGCCGAgGGgca-CGUaGCCGUGCu -3'
miRNA:   3'- uGCGCGGCUaCCacuaGUA-CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 54147 0.69 0.437848
Target:  5'- uCGaCGCCGAgcGGccaaaGGUCAacgGCCGCGCg -3'
miRNA:   3'- uGC-GCGGCUa-CCa----CUAGUa--CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 48357 0.69 0.437848
Target:  5'- aGCG-GCC-AUGGUGAUUc-GCUGCGCa -3'
miRNA:   3'- -UGCgCGGcUACCACUAGuaCGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 51945 0.69 0.446474
Target:  5'- uCGCG-CGGUGGUGcagcucgagcgcgGUCGgccGCCGUGCg -3'
miRNA:   3'- uGCGCgGCUACCAC-------------UAGUa--CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 36957 0.69 0.447438
Target:  5'- uUGCGCUGAaaccGUGGUCGUcCUGCGCg -3'
miRNA:   3'- uGCGCGGCUac--CACUAGUAcGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 50353 0.69 0.457143
Target:  5'- cCGCGCCGAgc-UGAUCGcgauggGCCGCuGCc -3'
miRNA:   3'- uGCGCGGCUaccACUAGUa-----CGGCG-CG- -5'
18789 3' -57.3 NC_004683.1 + 47042 0.68 0.46302
Target:  5'- cACGCGCgGuGUGGUGGcgcaucagcagcgCGUGCCGCu- -3'
miRNA:   3'- -UGCGCGgC-UACCACUa------------GUACGGCGcg -5'
18789 3' -57.3 NC_004683.1 + 55376 0.68 0.46696
Target:  5'- -gGCGCCGAaucc-GUCGUGCUGUGCg -3'
miRNA:   3'- ugCGCGGCUaccacUAGUACGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.