miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18789 3' -57.3 NC_004683.1 + 21667 1.1 0.00057
Target:  5'- cACGCGCCGAUGGUGAUCAUGCCGCGCc -3'
miRNA:   3'- -UGCGCGGCUACCACUAGUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 22664 0.81 0.072788
Target:  5'- gUGCGCCGA-GGUGAUCA--CCGCGCu -3'
miRNA:   3'- uGCGCGGCUaCCACUAGUacGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 20606 0.76 0.162599
Target:  5'- -gGUGCCGccGGUGAUCGUGCCGgauugguuaccCGCc -3'
miRNA:   3'- ugCGCGGCuaCCACUAGUACGGC-----------GCG- -5'
18789 3' -57.3 NC_004683.1 + 12787 0.74 0.206479
Target:  5'- cGCGCGCCGA-GGaugccGAggAUGCCGUGCc -3'
miRNA:   3'- -UGCGCGGCUaCCa----CUagUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 25010 0.74 0.206479
Target:  5'- cGCGgGUCGucacguUGGUGAUCA-GCCGCaGCa -3'
miRNA:   3'- -UGCgCGGCu-----ACCACUAGUaCGGCG-CG- -5'
18789 3' -57.3 NC_004683.1 + 52555 0.74 0.229082
Target:  5'- aGCGCGCgaGAcccUGcGUGGUgAUGUCGCGCg -3'
miRNA:   3'- -UGCGCGg-CU---AC-CACUAgUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 13497 0.73 0.25374
Target:  5'- gGCcUGCCGAUGGacgcGAUCAUGaCCGCGa -3'
miRNA:   3'- -UGcGCGGCUACCa---CUAGUAC-GGCGCg -5'
18789 3' -57.3 NC_004683.1 + 45929 0.72 0.273634
Target:  5'- -gGCGUCGG-GGUGAuUCGUGuuGUGCg -3'
miRNA:   3'- ugCGCGGCUaCCACU-AGUACggCGCG- -5'
18789 3' -57.3 NC_004683.1 + 56027 0.72 0.273634
Target:  5'- gACGaUGCCGAUGGUGGUCAcuuaUGCCuccaccaGCu -3'
miRNA:   3'- -UGC-GCGGCUACCACUAGU----ACGGcg-----CG- -5'
18789 3' -57.3 NC_004683.1 + 8362 0.72 0.280538
Target:  5'- uACGuCGCCGucuccugacGGUGAUCGgccCCGCGCg -3'
miRNA:   3'- -UGC-GCGGCua-------CCACUAGUac-GGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 3183 0.72 0.29476
Target:  5'- uGCGCGgCGgcGGUGAgacacgCAuUGCCGCGg -3'
miRNA:   3'- -UGCGCgGCuaCCACUa-----GU-ACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 20494 0.71 0.324871
Target:  5'- -gGgGCCGGUGGUGGag--GCCGgGCg -3'
miRNA:   3'- ugCgCGGCUACCACUaguaCGGCgCG- -5'
18789 3' -57.3 NC_004683.1 + 44526 0.71 0.332747
Target:  5'- -gGCGCCGGcgcGGUGG-CGcGCUGCGCg -3'
miRNA:   3'- ugCGCGGCUa--CCACUaGUaCGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 2157 0.71 0.340763
Target:  5'- gGCGgGCCuggGGUGGUCccugauUGCCGCGg -3'
miRNA:   3'- -UGCgCGGcuaCCACUAGu-----ACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 55062 0.71 0.346457
Target:  5'- gACGCGCUGAUGacgcugcggugugcGUaGAUCAUgcaGCCGCGg -3'
miRNA:   3'- -UGCGCGGCUAC--------------CA-CUAGUA---CGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 6678 0.71 0.348917
Target:  5'- gGCGCGCCGcUGGUGuggcuggcaCGUGUCGCcCg -3'
miRNA:   3'- -UGCGCGGCuACCACua-------GUACGGCGcG- -5'
18789 3' -57.3 NC_004683.1 + 20926 0.7 0.36905
Target:  5'- gACGCgGCCGGUGGcGGUCAcgaaacugacccgggUGaCCGCGa -3'
miRNA:   3'- -UGCG-CGGCUACCaCUAGU---------------AC-GGCGCg -5'
18789 3' -57.3 NC_004683.1 + 52447 0.7 0.374207
Target:  5'- gACGCGC----GGUGcuccCGUGCCGCGCg -3'
miRNA:   3'- -UGCGCGgcuaCCACua--GUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 23807 0.7 0.374207
Target:  5'- -gGCGCCGG-GGUGGUgCcgccgccgGUGCCGcCGCg -3'
miRNA:   3'- ugCGCGGCUaCCACUA-G--------UACGGC-GCG- -5'
18789 3' -57.3 NC_004683.1 + 53268 0.7 0.377671
Target:  5'- uGCGCGCUGcagggauugccagacGUaGGUGAUC-UGCCGgGUg -3'
miRNA:   3'- -UGCGCGGC---------------UA-CCACUAGuACGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.